MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:103.1 nTPM
HPA:103.1 nTPM
GTEx:110.8 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Mouse:141.4 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.1
2666 Male, age 74, left hemisphere 104.2
1827 Male, age 72, unknown 102.6
1833 Male, age 53, unknown 99.9
2828 Female, age 72, unknown 99.1
1870 Female, age 42, unknown 98.7
1830 Male, age 51, unknown 97.3
2019 Male, age 18, unknown 95.9
2411 Female, age 72, unknown 94.7
2219 Male, age 76, both hemispheres 92.8
2586 Male, age 75, left hemisphere 85.9
Dorsal raphe nucleus
nTPM: 90.3
1828 Male, age 53, unknown 95.3
2750 Male, age 76, both hemispheres 92.7
2016 Female, age 72, unknown 91.2
2047 Male, age 72, unknown 86.4
2298 Female, age 72, unknown 86.0
Inferior colliculus
nTPM: 100.0
2849 Male, age 72, unknown 111.4
1890 Male, age 53, unknown 99.6
1848 Female, age 42, unknown 95.3
2097 Female, age 72, unknown 93.7
Median raphe nucleus
nTPM: 99.5
2220 Male, age 76, midline 99.5
Pedunculopontine tegmental nucleus
nTPM: 103.1
2338 Male, age 61, both hemispheres 111.1
2334 Male, age 80, both hemispheres 105.3
1921 Female, age 85, both hemispheres 92.9
Periaquaductal grey, anterior
nTPM: 87.9
1795 Male, age 51, unknown 89.0
1947 Male, age 18, unknown 87.8
2502 Female, age 75, unknown 86.9
Periaquaductal grey, dorsal
nTPM: 102.2
2850 Male, age 76, both hemispheres 117.7
1831 Male, age 72, unknown 104.8
1840 Male, age 53, unknown 93.4
2464 Female, age 72, unknown 93.0
Periaquaductal grey, lateral
nTPM: 95.8
2140 Male, age 76, both hemispheres 104.1
2053 Male, age 18, unknown 94.4
2272 Male, age 74, both hemispheres 88.9
Pretectal area
nTPM: 101.1
1816 Male, age 51, unknown 111.5
1817 Female, age 42, unknown 108.6
1815 Male, age 53, unknown 107.1
2825 Male, age 18, unknown 104.3
2407 Male, age 75, both hemispheres 103.2
1944 Female, age 72, unknown 101.1
2007 Male, age 72, unknown 99.8
2667 Female, age 75, unknown 98.6
2316 Male, age 76, right hemisphere 94.3
2224 Female, age 72, unknown 91.6
2273 Male, age 74, both hemispheres 91.5
Red nucleus
nTPM: 102.5
2503 Female, age 72, unknown 111.2
2725 Female, age 75, unknown 110.0
2588 Male, age 74, left hemisphere 106.5
2823 Male, age 76, right hemisphere 104.9
1821 Female, age 72, unknown 104.8
1954 Female, age 42, unknown 101.5
2227 Male, age 72, unknown 101.2
1904 Male, age 53, unknown 100.1
2785 Male, age 18, unknown 97.8
2584 Male, age 75, left hemisphere 97.5
1865 Male, age 51, unknown 97.3
2769 Male, age 72, unknown 96.9
Substantia nigra
nTPM: 94.7
2665 Male, age 74, both hemispheres 112.9
2583 Male, age 75, right hemisphere 101.0
2699 Male, age 18, unknown 99.7
1889 Female, age 72, unknown 98.3
2590 Female, age 75, unknown 93.0
1941 Male, age 53, unknown 92.5
1851 Male, age 51, unknown 91.0
1916 Female, age 42, unknown 89.1
2241 Male, age 72, unknown 85.1
2409 Female, age 72, unknown 84.8
Superior colliculus
nTPM: 98.5
2587 Male, age 74, left hemisphere 104.7
1895 Male, age 76, right hemisphere 104.6
1913 Female, age 42, unknown 102.1
1995 Male, age 72, unknown 101.9
1839 Male, age 51, unknown 97.4
2668 Female, age 75, unknown 96.1
2261 Male, age 18, unknown 95.8
1796 Male, age 53, unknown 95.3
2087 Female, age 72, unknown 94.0
2664 Male, age 75, both hemispheres 92.8
Ventral tegmental area
nTPM: 93.2
2218 Male, age 76, both hemispheres 97.8
2223 Female, age 72, unknown 97.7
2021 Male, age 53, unknown 93.5
1942 Male, age 51, unknown 91.2
1915 Female, age 42, unknown 91.0
2410 Female, age 72, unknown 88.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 110.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.8
Samples: 139

Max nTPM: 183.1
Min nTPM: 65.2
Std nTPM: 24.4
Median nTPM: 108.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 183.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 174.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 169.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 166.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 164.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 160.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 160.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 155.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 153.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 152.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 152.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.4
Samples: 4

Max nTPM: 151.8
Min nTPM: 132.1
Sample A Male 132.1
Sample B Male 143.2
Sample C Female 151.8
Sample D Female 138.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
68161477 Antisense, RP_041122_01_E07, Mouse strain C57BL/6J (56 days, male) 5.2

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