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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:280.6 nTPM
GTEx:280.6 nTPM
FANTOM5:482.3 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:215.4 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 280.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 280.6
Samples: 105

Max nTPM: 406.9
Min nTPM: 183.3
Std nTPM: 46.7
Median nTPM:
41_1 94 years, female 406.9
218_1 71 years, female 396.4
384_1 83 years, male 384.9
2_1 77 years, female 381.0
379_1 60 years, male 376.3
495_1 57 years, female 374.7
173_1 67 years, male 358.2
322_1 76 years, male 354.6
145_1 84 years, male 350.5
308_1 70 years, female 346.3
375_1 74 years, female 346.0
120_1 70 years, female 340.9
307_1 66 years, female 339.6
447_1 81 years, male 339.0
139_1 64 years, female 330.5
17_1 71 years, male 328.8
4_1 88 years, female 328.2
237_1 82 years, male 327.8
35_1 74 years, female 326.7
315_1 62 years, female 325.7
347_1 72 years, male 324.9
295_1 61 years, female 323.6
316_1 62 years, male 322.5
42_1 85 years, male 320.1
119_1 70 years, female 318.8
321_1 62 years, female 314.9
6_1 73 years, female 314.6
117_1 61 years, male 311.7
137_1 83 years, male 306.4
311_1 78 years, male 304.2
317_1 60 years, male 303.2
377_1 82 years, female 302.4
153_1 70 years, female 300.9
319_1 81 years, male 300.9
452_1 88 years, female 299.7
324_1 76 years, male 299.6
386_1 76 years, male 297.7
189_1 76 years, male 293.0
491_1 89 years, female 290.6
376_1 75 years, female 290.2
396_1 62 years, male 287.2
414_1 84 years, female 286.1
126_1 63 years, male 285.5
501_1 88 years, male 283.0
313_1 79 years, female 282.9
506_1 65 years, male 281.6
99_1 64 years, male 281.3
389_1 86 years, female 281.0
394_1 75 years, female 279.6
162_1 79 years, female 278.3
109_1 81 years, female 273.5
415_1 77 years, female 273.2
518_1 75 years, female 272.3
265_1 87 years, male 271.7
490_1 67 years, female 270.6
526_1 61 years, male 270.2
177_1 74 years, male 268.3
89_1 63 years, male 267.5
413_1 59 years, female 265.7
480_1 63 years, male 263.0
351_1 91 years, male 260.2
314_1 67 years, male 260.1
115_1 83 years, male 259.6
243_1 75 years, male 259.5
406_1 79 years, male 258.0
499_1 55 years, female 257.9
229_1 69 years, female 257.0
354_1 81 years, female 256.8
142_1 61 years, female 256.6
404_1 82 years, female 256.6
335_1 73 years, female 256.4
350_1 84 years, female 254.2
264_1 73 years, female 253.9
348_1 84 years, male 253.4
81_1 67 years, male 251.4
349_1 83 years, male 250.7
320_1 89 years, female 249.7
288_1 66 years, female 248.6
43_1 64 years, female 248.2
246_1 77 years, male 246.6
254_1 77 years, female 245.9
18_1 88 years, male 245.0
266_1 85 years, male 244.4
353_1 82 years, female 243.4
163_1 78 years, male 241.9
468_1 89 years, male 241.5
172_1 72 years, female 239.0
466_1 57 years, female 233.9
286_1 68 years, female 232.4
405_1 91 years, male 228.1
425_1 59 years, female 227.5
251_1 78 years, male 226.6
503_1 68 years, male 226.3
318_1 68 years, male 225.2
9_1 66 years, female 224.2
292_1 71 years, male 222.2
293_1 68 years, female 221.0
291_1 76 years, male 218.5
352_1 62 years, male 217.2
356_1 87 years, female 214.1
517_1 88 years, male 211.6
32_1 67 years, male 211.2
355_1 70 years, female 209.9
217_1 76 years, male 208.4
149_1 88 years, male 183.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 482.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 482.3
FF:10030-101E3 24-65 years, mixed 482.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.2
Pig sample Sample description nTPM
Retina
nTPM: 6.2
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 6.0
Sample C Male 5.9
Sample D Male 6.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 215.4
Mouse sample Sample description nTPM
Retina
nTPM: 215.4
Samples: 4

Max nTPM: 278.7
Min nTPM: 181.3
Sample A Male 213.7
Sample B Male 181.3
Sample C Female 278.7
Sample D Female 188.0

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by the Knut & Alice Wallenberg Foundation.