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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:817.6 nTPM
HPA:817.6 nTPM
GTEx:913.1 nTPM
FANTOM5:336.7 Scaled Tags Per Million
Pig:6.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 817.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 803.5
1981 Female, age 72, midline 867.8
2565 Male, age 75, midline 791.4
2194 Female, age 79, both hemispheres 786.3
2816 Male, age 47, midline 786.2
2048 Male, age 55, midline 785.5
Cervical spinal cord, dorsal horn
nTPM: 817.6
2173 Female, age 72, unknown 887.9
2296 Male, age 66, both hemispheres 860.0
2069 Male, age 47, both hemispheres 837.2
1877 Male, age 55, unknown 790.1
2721 Male, age 90, both hemispheres 772.5
2297 Male, age 75, both hemispheres 758.1
Cervical spinal cord, ventral horn
nTPM: 815.9
2098 Female, age 72, unknown 912.7
2809 Male, age 90, both hemispheres 818.2
2480 Male, age 75, both hemispheres 813.4
2295 Male, age 66, both hemispheres 802.1
2068 Male, age 55, unknown 792.6
2820 Female, age 79, both hemispheres 756.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 913.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 913.1
Samples: 159

Max nTPM: 1450.9
Min nTPM: 538.1
Std nTPM: 185.6
Median nTPM: 884.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1450.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1354.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1331.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1327.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1267.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1250.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1244.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1239.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1225.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1219.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1216.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1206.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1203.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1200.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1192.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1178.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1169.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1155.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1155.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1152.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1150.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1141.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1141.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1132.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1128.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1111.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1092.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1083.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1077.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1071.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1066.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1062.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1060.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1058.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1052.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1049.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1048.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1045.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1045.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1044.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1035.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1033.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1029.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1027.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1024.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1024.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1024.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1021.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1015.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1005.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1003.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1001.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 995.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 980.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 979.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 978.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 977.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 975.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 973.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 970.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 968.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 966.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 960.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 957.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 957.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 950.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 946.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 943.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 934.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 928.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 915.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 909.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 907.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 900.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 895.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 887.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 887.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 886.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 886.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 884.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 884.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 884.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 881.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 879.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 878.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 878.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 878.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 866.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 864.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 864.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 862.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 860.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 859.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 855.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 854.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 853.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 851.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 849.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 848.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 847.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 842.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 842.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 835.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 831.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 826.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 823.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 823.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 822.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 822.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 817.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 817.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 806.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 805.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 804.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 794.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 791.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 790.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 783.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 780.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 778.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 771.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 770.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 764.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 763.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 761.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 759.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 748.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 745.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 741.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 732.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 727.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 726.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 725.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 722.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 718.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 716.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 713.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 713.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 698.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 693.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 680.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 679.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 676.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 673.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 671.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 670.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 661.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 654.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 643.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 639.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 637.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 630.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 623.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 607.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 602.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 561.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 558.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 551.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 538.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 336.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 336.7
FF:10181-103D1 60 years, female 340.0
FF:10159-103A6 76 years, female 333.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 6.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 3.8
Sample A Female 7.5
Sample B Female 7.1
Sample C Male 3.8
Sample D Male 6.3
Ventral spinal cord
nTPM: 6.5
Samples: 4

Max nTPM: 8.5
Min nTPM: 4.4
Sample A Female 6.1
Sample B Female 7.1
Sample C Male 4.4
Sample D Male 8.5

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