We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
UBB
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • UBB
BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1713.9 nTPM
HPA:1713.9 nTPM
FANTOM5:566.8 Scaled Tags Per Million
Pig:1866.1 nTPM
Mouse:2466.7 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 1713.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1523.0
2188 Female, age 91, both hemispheres 1584.7
2090 Male, age 80, both hemispheres 1530.0
2301 Female, age 85, both hemispheres 1507.5
1984 Male, age 76, both hemispheres 1469.8
Area postrema
nTPM: 1492.0
2306 Male, age 80, both hemispheres 1506.2
2799 Male, age 61, both hemispheres 1503.1
2054 Male, age 76, both hemispheres 1466.7
Cuneate nuclei
nTPM: 1486.0
2131 Male, age 76, both hemispheres 1509.2
2376 Male, age 61, both hemispheres 1484.1
2381 Male, age 80, both hemispheres 1464.6
Dorsal cochlear nucleus
nTPM: 1480.2
2187 Female, age 91, both hemispheres 1565.1
2802 Male, age 74, right hemisphere 1494.0
2058 Male, age 76, both hemispheres 1486.7
2370 Male, age 61, both hemispheres 1446.8
2378 Male, age 80, both hemispheres 1408.2
Dorsal medullary reticular nucleus
nTPM: 1534.6
2040 Female, age 85, both hemispheres 1711.0
2373 Male, age 61, both hemispheres 1474.5
2088 Male, age 76, both hemispheres 1418.4
Dorsal motor vagal complex
nTPM: 1554.1
2000 Male, age 74, unknown 1678.5
2813 Female, age 72, unknown 1673.8
2133 Female, age 91, both hemispheres 1661.9
2844 Male, age 55, unknown 1637.5
2643 Male, age 74, both hemispheres 1519.2
2797 Male, age 61, both hemispheres 1481.1
2185 Male, age 76, both hemispheres 1406.9
2807 Female, age 85, both hemispheres 1374.0
Dorsal tegmental nucleus
nTPM: 1569.5
2083 Male, age 80, both hemispheres 1658.1
2358 Male, age 61, both hemispheres 1586.6
2326 Male, age 74, both hemispheres 1559.9
1936 Male, age 76, left hemisphere 1473.4
Dorsolateral tegmental area
nTPM: 1542.9
2751 Female, age 85, both hemispheres 1621.0
2654 Male, age 80, both hemispheres 1587.1
2141 Male, age 76, both hemispheres 1531.5
2337 Male, age 61, both hemispheres 1518.8
2360 Male, age 74, both hemispheres 1456.1
Gigantocellular reticular nuclei, medullary
nTPM: 1550.0
2314 Male, age 61, both hemispheres 1681.1
1876 Female, age 85, both hemispheres 1644.3
2022 Male, age 76, right hemisphere 1553.8
2462 Male, age 74, both hemispheres 1499.8
2310 Male, age 80, both hemispheres 1475.8
2387 Female, age 91, both hemispheres 1445.0
Gigantocellular reticular nuclei, pars
nTPM: 1569.9
2084 Female, age 85, both hemispheres 1637.0
2168 Male, age 76, both hemispheres 1625.5
2336 Male, age 61, both hemispheres 1620.1
2330 Male, age 80, both hemispheres 1489.5
2706 Male, age 80, both hemispheres 1477.3
Inferior olive
nTPM: 1574.5
2563 Male, age 74, both hemispheres 1699.9
2628 Female, age 91, both hemispheres 1603.5
2178 Male, age 61, both hemispheres 1591.8
2085 Female, age 85, both hemispheres 1570.9
2379 Male, age 80, both hemispheres 1406.4
Kolliker-Fuse nucleus
nTPM: 1580.1
2163 Male, age 80, both hemispheres 1649.6
2793 Female, age 91, left hemisphere 1603.1
2315 Male, age 76, right hemisphere 1487.6
Lateral lemniscal nuclei
nTPM: 1564.8
2169 Male, age 76, both hemispheres 1674.0
2746 Female, age 85, left hemisphere 1590.6
2036 Male, age 80, both hemispheres 1568.6
2453 Male, age 74, right hemisphere 1517.2
2320 Female, age 91, left hemisphere 1473.5
Lateral medullary reticular nucleus
nTPM: 1607.2
2305 Male, age 74, both hemispheres 1708.4
2374 Male, age 61, both hemispheres 1669.8
2044 Male, age 76, both hemispheres 1609.2
2852 Male, age 80, both hemispheres 1561.1
2190 Female, age 85, both hemispheres 1556.5
2804 Female, age 91, both hemispheres 1538.3
Lateral parabrachial nucleus
nTPM: 1538.1
2139 Female, age 85, right hemisphere 1669.1
2013 Male, age 80, both hemispheres 1563.5
2792 Male, age 76, both hemispheres 1473.9
2790 Male, age 61, both hemispheres 1445.9
Lateral vestibular nucleus
nTPM: 1572.4
2311 Male, age 80, both hemispheres 1577.7
2184 Male, age 76, both hemispheres 1567.0
Locus coeruleus
nTPM: 1713.9
2014 Male, age 55, unknown 1838.0
2123 Female, age 91, both hemispheres 1824.9
2720 Male, age 74, both hemispheres 1740.6
1980 Male, age 76, both hemispheres 1698.6
2788 Male, age 74, unknown 1690.0
2317 Female, age 72, unknown 1616.1
2162 Male, age 80, both hemispheres 1589.1
Medial olivary nucleus
nTPM: 1578.4
1943 Male, age 61, both hemispheres 1692.1
2138 Female, age 91, both hemispheres 1589.3
2851 Male, age 80, both hemispheres 1536.4
1962 Male, age 76, both hemispheres 1495.9
Medial parabrachial nucleus
nTPM: 1575.9
2170 Female, age 91, both hemispheres 1649.7
2854 Male, age 80, both hemispheres 1610.3
2463 Female, age 85, right hemisphere 1563.6
2156 Male, age 61, both hemispheres 1558.5
2786 Male, age 76, both hemispheres 1497.6
Medial periolivary nuclei
nTPM: 1572.7
2171 Female, age 85, both hemispheres 1698.8
2063 Male, age 76, both hemispheres 1644.0
2791 Male, age 74, right hemisphere 1599.0
2081 Male, age 80, both hemispheres 1476.2
2458 Female, age 91, both hemispheres 1445.2
Medial vestibular nucleus
nTPM: 1672.3
2801 Male, age 74, both hemispheres 1778.8
2624 Male, age 61, both hemispheres 1697.4
2134 Male, age 76, both hemispheres 1661.4
2803 Female, age 91, both hemispheres 1656.4
2093 Male, age 80, both hemispheres 1630.1
2743 Female, age 85, both hemispheres 1609.8
Motor facial nucleus
nTPM: 1583.2
2365 Male, age 74, right hemisphere 1683.3
2062 Male, age 76, both hemispheres 1673.4
2697 Female, age 85, both hemispheres 1635.2
2126 Male, age 61, both hemispheres 1558.7
2327 Male, age 80, both hemispheres 1479.7
2795 Female, age 91, both hemispheres 1468.9
Motor hypoglossal nucleus
nTPM: 1607.9
2461 Male, age 61, both hemispheres 1692.5
2132 Female, age 85, both hemispheres 1686.2
2125 Female, age 91, both hemispheres 1673.2
2182 Male, age 80, both hemispheres 1526.4
2277 Male, age 76, both hemispheres 1461.2
Motor trigeminal nucleus
nTPM: 1509.1
2335 Male, age 61, both hemispheres 1562.3
2079 Male, age 80, both hemispheres 1536.0
2560 Male, age 74, both hemispheres 1495.1
2309 Male, age 76, both hemispheres 1490.5
2321 Female, age 91, both hemispheres 1461.4
Nuclei of the trapezoid body
nTPM: 1569.2
1983 Male, age 76, both hemispheres 1703.5
2735 Female, age 85, both hemispheres 1641.8
2159 Male, age 61, both hemispheres 1586.2
2166 Male, age 80, both hemispheres 1528.7
2368 Female, age 91, both hemispheres 1385.6
Nucleus ambiguus
nTPM: 1570.9
2096 Female, age 85, both hemispheres 1649.2
2071 Male, age 76, both hemispheres 1492.5
Nucleus cuneatus
nTPM: 1451.0
2564 Male, age 74, both hemispheres 1554.8
2100 Male, age 76, both hemispheres 1450.6
2562 Male, age 61, both hemispheres 1447.4
2808 Female, age 85, both hemispheres 1439.1
2380 Male, age 80, both hemispheres 1414.9
2805 Female, age 91, both hemispheres 1399.2
Nucleus gracilis
nTPM: 1539.2
2627 Male, age 74, both hemispheres 1722.8
2382 Male, age 80, both hemispheres 1500.9
2299 Female, age 85, both hemispheres 1393.9
Nucleus raphe magnus
nTPM: 1601.2
2172 Female, age 85, both hemispheres 1749.0
2160 Male, age 61, both hemispheres 1653.1
2455 Male, age 74, both hemispheres 1645.7
2051 Male, age 76, both hemispheres 1575.5
2328 Male, age 80, both hemispheres 1549.3
2459 Female, age 91, both hemispheres 1434.6
Nucleus raphe obscurus
nTPM: 1558.0
2800 Male, age 61, midline 1642.1
2845 Female, age 85, midline 1617.5
2142 Male, age 76, midline 1414.3
Nucleus raphe pallidus
nTPM: 1617.1
1924 Male, age 61, midline 1704.8
2183 Male, age 80, midline 1685.6
2145 Male, age 76, midline 1461.0
Nucleus tractus solitarii
nTPM: 1470.7
2656 Male, age 76, both hemispheres 1521.0
2144 Female, age 91, right hemisphere 1512.1
2191 Female, age 85, both hemispheres 1443.1
2307 Male, age 80, both hemispheres 1406.6
Paramedian reticular nucleus
nTPM: 1595.0
2050 Female, age 85, both hemispheres 1700.1
2057 Male, age 80, both hemispheres 1615.5
2313 Male, age 61, both hemispheres 1564.7
2052 Male, age 76, both hemispheres 1499.6
Parvicellular reticular nuclei
nTPM: 1512.8
2119 Male, age 80, both hemispheres 1613.9
2095 Male, age 76, both hemispheres 1524.0
2558 Male, age 74, both hemispheres 1400.4
Parvicellular reticular nuclei, medullary
nTPM: 1632.5
2189 Female, age 91, both hemispheres 1685.1
2091 Female, age 85, both hemispheres 1618.4
2181 Male, age 80, left hemisphere 1593.8
Peritrigeminal nucleus
nTPM: 1616.3
2067 Female, age 85, both hemispheres 1642.9
2179 Male, age 61, both hemispheres 1617.5
2136 Male, age 76, both hemispheres 1588.5
Pontine nuclei
nTPM: 1655.9
2787 Female, age 85, both hemispheres 1844.2
1863 Male, age 55, unknown 1778.4
2109 Female, age 72, unknown 1722.4
2454 Male, age 74, left hemisphere 1664.3
1968 Male, age 76, left hemisphere 1634.6
2727 Male, age 61, right hemisphere 1604.1
2319 Female, age 91, both hemispheres 1523.0
2115 Male, age 80, left hemisphere 1476.0
Pontine raphe nucleus
nTPM: 1614.7
2122 Female, age 85, midline 1665.7
2853 Male, age 76, midline 1563.8
Posteroventral cochlear nucleus
nTPM: 1547.4
2752 Female, age 85, both hemispheres 1611.5
2135 Female, age 91, both hemispheres 1557.8
2341 Male, age 80, both hemispheres 1554.7
2070 Male, age 76, both hemispheres 1540.6
2371 Male, age 61, both hemispheres 1472.5
Prepositus hypoglossal nucleus
nTPM: 1592.6
2855 Female, age 85, right hemisphere 1660.0
2086 Male, age 80, both hemispheres 1525.2
Principal sensory trigeminal nucleus
nTPM: 1553.9
2008 Male, age 80, left hemisphere 1583.1
2158 Male, age 61, both hemispheres 1574.3
2324 Male, age 76, both hemispheres 1540.6
2367 Female, age 91, left hemisphere 1517.7
Reticular pontine nucleus, caudal
nTPM: 1544.3
2092 Male, age 76, both hemispheres 1636.9
2559 Male, age 74, both hemispheres 1571.7
2332 Male, age 80, right hemisphere 1486.1
2457 Female, age 91, both hemispheres 1482.3
Reticular pontine nucleus, oral
nTPM: 1596.0
1939 Male, age 80, both hemispheres 1649.6
2012 Female, age 85, both hemispheres 1643.2
2366 Female, age 91, both hemispheres 1573.9
2167 Male, age 76, both hemispheres 1558.6
2361 Male, age 74, both hemispheres 1554.6
Reticulotegmental nucleus
nTPM: 1520.7
2325 Male, age 76, both hemispheres 1570.2
2322 Female, age 91, both hemispheres 1534.2
2333 Male, age 80, both hemispheres 1505.5
2452 Male, age 74, both hemispheres 1472.7
Spinal trigeminal nucleus, caudal
nTPM: 1566.0
2390 Female, age 91, both hemispheres 1678.3
2312 Male, age 61, both hemispheres 1577.8
2642 Male, age 74, both hemispheres 1566.8
2308 Male, age 80, both hemispheres 1509.1
2447 Male, age 76, both hemispheres 1498.2
Spinal trigeminal nucleus, interpolar
nTPM: 1630.5
2625 Male, age 61, both hemispheres 1747.1
2066 Male, age 76, right hemisphere 1704.9
2033 Male, age 80, both hemispheres 1599.1
2389 Female, age 91, both hemispheres 1557.6
2386 Female, age 85, both hemispheres 1543.7
Spinal trigeminal nucleus, oral
nTPM: 1550.9
2164 Male, age 80, both hemispheres 1590.1
2737 Female, age 85, both hemispheres 1564.3
1978 Male, age 76, both hemispheres 1498.3
Spinal vestibular nucleus
nTPM: 1579.6
2780 Male, age 80, both hemispheres 1650.7
2186 Female, age 91, both hemispheres 1645.4
2806 Female, age 85, both hemispheres 1605.7
2796 Male, age 61, both hemispheres 1576.7
2748 Male, age 76, both hemispheres 1566.8
2384 Male, age 74, both hemispheres 1432.6
Subcoeruleus area
nTPM: 1555.7
1958 Male, age 80, both hemispheres 1660.9
2323 Female, age 91, left hemisphere 1616.6
2369 Female, age 85, left hemisphere 1588.3
2089 Male, age 76, left hemisphere 1478.4
2451 Male, age 74, both hemispheres 1434.2
Superior olive
nTPM: 1554.9
1875 Female, age 85, both hemispheres 1675.5
2364 Male, age 74, right hemisphere 1592.9
2020 Male, age 76, both hemispheres 1581.4
2329 Male, age 80, right hemisphere 1482.2
2561 Female, age 91, both hemispheres 1442.4
Superior vestibular nucleus
nTPM: 1585.1
2383 Male, age 74, both hemispheres 1649.4
2015 Male, age 80, both hemispheres 1599.7
2061 Male, age 76, both hemispheres 1506.2
Ventral medullary reticular nucleus
nTPM: 1510.6
2060 Male, age 76, both hemispheres 1540.9
2372 Male, age 61, both hemispheres 1480.3
Ventral periolivary nuclei
nTPM: 1585.2
2130 Female, age 85, both hemispheres 1678.6
2165 Male, age 80, both hemispheres 1638.9
2023 Male, age 76, both hemispheres 1599.2
2794 Female, age 91, left hemisphere 1424.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1582.5
2180 Male, age 61, both hemispheres 1665.2
2741 Female, age 85, both hemispheres 1612.1
1986 Male, age 76, both hemispheres 1610.9
2118 Male, age 80, both hemispheres 1520.9
2302 Female, age 91, both hemispheres 1503.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1561.3
2840 Female, age 85, both hemispheres 1637.3
2359 Male, age 61, both hemispheres 1606.0
1959 Male, age 76, both hemispheres 1604.6
2449 Male, age 74, both hemispheres 1604.5
2161 Male, age 80, both hemispheres 1499.4
2456 Female, age 91, both hemispheres 1415.9

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 566.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 566.8
FF:10182-103D2 60 years, female 589.9
FF:10165-103B3 76 years, female 543.8
Medulla oblongata
Scaled Tags Per Million: 418.9
FF:10174-103C3 60 years, female 448.5
FF:10038-101F2 18-64 years, mixed 428.8
FF:10155-103A2 76 years, female 379.3
Pons
Scaled Tags Per Million: 507.1
FF:10033-101E6 18-54 years, mixed 507.1

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1866.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1726.0
Samples: 4

Max nTPM: 1936.1
Min nTPM: 1509.9
Sample A Female 1509.9
Sample B Female 1658.6
Sample C Male 1799.2
Sample D Male 1936.1
Pons
nTPM: 1866.1
Samples: 4

Max nTPM: 2010.9
Min nTPM: 1624.8
Sample A Female 1998.7
Sample B Female 1624.8
Sample C Male 1829.9
Sample D Male 2010.9

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2466.7
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 2466.8
Samples: 4

Max nTPM: 2628.5
Min nTPM: 2334.9
Sample A Male 2433.6
Sample B Male 2334.9
Sample C Female 2628.5
Sample D Female 2470.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.