MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.8 nTPM
HPA:61.8 nTPM
GTEx:87.0 nTPM
FANTOM5:57.0 Scaled Tags Per Million
Pig:71.7 nTPM
Mouse:29.6 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.6
2586 Male, age 75, left hemisphere 71.3
2666 Male, age 74, left hemisphere 65.1
1827 Male, age 72, unknown 63.4
2219 Male, age 76, both hemispheres 59.5
2828 Female, age 72, unknown 57.1
2411 Female, age 72, unknown 56.3
2019 Male, age 18, unknown 54.7
1833 Male, age 53, unknown 53.3
1830 Male, age 51, unknown 53.1
1870 Female, age 42, unknown 52.6
Dorsal raphe nucleus
nTPM: 56.3
2047 Male, age 72, unknown 61.5
2298 Female, age 72, unknown 58.0
1828 Male, age 53, unknown 57.8
2750 Male, age 76, both hemispheres 55.2
2016 Female, age 72, unknown 48.9
Inferior colliculus
nTPM: 53.9
2097 Female, age 72, unknown 57.3
2849 Male, age 72, unknown 53.9
1890 Male, age 53, unknown 53.0
1848 Female, age 42, unknown 51.6
Median raphe nucleus
nTPM: 58.5
2220 Male, age 76, midline 58.5
Pedunculopontine tegmental nucleus
nTPM: 55.4
1921 Female, age 85, both hemispheres 58.7
2334 Male, age 80, both hemispheres 57.6
2338 Male, age 61, both hemispheres 49.9
Periaquaductal grey, anterior
nTPM: 61.8
1795 Male, age 51, unknown 64.6
1947 Male, age 18, unknown 63.7
2502 Female, age 75, unknown 57.2
Periaquaductal grey, dorsal
nTPM: 52.5
1840 Male, age 53, unknown 54.1
2464 Female, age 72, unknown 53.8
2850 Male, age 76, both hemispheres 51.0
1831 Male, age 72, unknown 50.9
Periaquaductal grey, lateral
nTPM: 49.3
2140 Male, age 76, both hemispheres 50.5
2272 Male, age 74, both hemispheres 48.8
2053 Male, age 18, unknown 48.6
Pretectal area
nTPM: 56.9
1816 Male, age 51, unknown 67.0
2007 Male, age 72, unknown 66.5
1817 Female, age 42, unknown 64.3
1944 Female, age 72, unknown 60.4
1815 Male, age 53, unknown 59.7
2667 Female, age 75, unknown 56.6
2825 Male, age 18, unknown 53.1
2224 Female, age 72, unknown 52.6
2407 Male, age 75, both hemispheres 51.9
2273 Male, age 74, both hemispheres 47.3
2316 Male, age 76, right hemisphere 46.3
Red nucleus
nTPM: 54.6
2588 Male, age 74, left hemisphere 61.3
2584 Male, age 75, left hemisphere 60.4
2785 Male, age 18, unknown 58.5
2769 Male, age 72, unknown 55.4
1821 Female, age 72, unknown 55.1
2227 Male, age 72, unknown 54.9
2503 Female, age 72, unknown 54.9
1954 Female, age 42, unknown 52.9
2725 Female, age 75, unknown 52.5
1865 Male, age 51, unknown 50.3
1904 Male, age 53, unknown 49.4
2823 Male, age 76, right hemisphere 49.3
Substantia nigra
nTPM: 58.5
1916 Female, age 42, unknown 68.6
2665 Male, age 74, both hemispheres 67.9
1941 Male, age 53, unknown 64.4
1889 Female, age 72, unknown 61.0
1851 Male, age 51, unknown 60.1
2699 Male, age 18, unknown 59.3
2583 Male, age 75, right hemisphere 53.8
2590 Female, age 75, unknown 51.6
2409 Female, age 72, unknown 49.8
2241 Male, age 72, unknown 48.1
Superior colliculus
nTPM: 56.4
2668 Female, age 75, unknown 70.5
1796 Male, age 53, unknown 60.7
2664 Male, age 75, both hemispheres 59.8
2087 Female, age 72, unknown 58.7
2261 Male, age 18, unknown 56.5
1839 Male, age 51, unknown 53.4
2587 Male, age 74, left hemisphere 52.8
1895 Male, age 76, right hemisphere 52.6
1913 Female, age 42, unknown 50.4
1995 Male, age 72, unknown 48.9
Ventral tegmental area
nTPM: 55.9
1915 Female, age 42, unknown 62.7
2218 Male, age 76, both hemispheres 57.7
2410 Female, age 72, unknown 57.3
1942 Male, age 51, unknown 54.2
2223 Female, age 72, unknown 53.1
2021 Male, age 53, unknown 50.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.0
Samples: 139

Max nTPM: 213.3
Min nTPM: 37.4
Std nTPM: 25.6
Median nTPM: 84.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 213.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 142.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 141.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 139.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 137.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 136.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 135.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 135.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 132.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 129.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 128.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.0
FF:10158-103A5 76 years, female 57.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.7
Pig sample Sample description nTPM
Midbrain
nTPM: 69.8
Samples: 4

Max nTPM: 81.0
Min nTPM: 49.9
Sample A Female 49.9
Sample B Female 70.3
Sample C Male 77.9
Sample D Male 81.0
Periaqueductal gray
nTPM: 58.9
Samples: 3

Max nTPM: 70.4
Min nTPM: 52.7
Sample B Female 53.6
Sample C Male 70.4
Sample D Male 52.7
Substantia nigra
nTPM: 65.3
Samples: 4

Max nTPM: 90.0
Min nTPM: 39.1
Sample A Female 90.0
Sample B Female 54.7
Sample C Male 77.5
Sample D Male 39.1
Superior colliculi
nTPM: 71.7
Samples: 4

Max nTPM: 92.6
Min nTPM: 47.9
Sample A Female 92.6
Sample B Female 47.9
Sample C Male 73.0
Sample D Male 73.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 32.2
Min nTPM: 25.6
Sample A Male 32.2
Sample B Male 30.0
Sample C Female 25.6
Sample D Female 30.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
70598359 Antisense, RP_050407_04_D04, Mouse strain C57BL/6J (56 days, male) 7.3
74988737 Antisense, RP_060315_04_B05, Mouse strain C57BL/6J (56 days, male) 6.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.