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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:54.2 nTPM
HPA:54.2 nTPM
GTEx:63.5 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:54.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 54.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 54.2
2194 Female, age 79, both hemispheres 60.6
2565 Male, age 75, midline 59.3
1981 Female, age 72, midline 53.1
2816 Male, age 47, midline 50.0
2048 Male, age 55, midline 47.9
Cervical spinal cord, dorsal horn
nTPM: 51.1
2173 Female, age 72, unknown 53.4
2297 Male, age 75, both hemispheres 53.3
2721 Male, age 90, both hemispheres 51.9
1877 Male, age 55, unknown 50.7
2069 Male, age 47, both hemispheres 48.8
2296 Male, age 66, both hemispheres 48.8
Cervical spinal cord, ventral horn
nTPM: 53.6
2820 Female, age 79, both hemispheres 58.8
2068 Male, age 55, unknown 58.6
2295 Male, age 66, both hemispheres 55.0
2480 Male, age 75, both hemispheres 54.8
2809 Male, age 90, both hemispheres 49.8
2098 Female, age 72, unknown 44.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 63.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 63.5
Samples: 159

Max nTPM: 109.6
Min nTPM: 35.2
Std nTPM: 12.9
Median nTPM: 62.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 109.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 103.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 96.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 92.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 91.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 91.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 89.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 88.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 87.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 87.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 83.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 81.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 80.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 79.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 78.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 78.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 77.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 76.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 76.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 75.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 74.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 74.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 74.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 74.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 74.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 74.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 74.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 73.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 73.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 73.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 73.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 73.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 72.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 72.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 72.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 71.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 71.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 71.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 71.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 71.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 71.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 71.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 71.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 70.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 70.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 70.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 69.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 68.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 68.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 68.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 68.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 68.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 68.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 68.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 67.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 67.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 67.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 67.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 66.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 66.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 66.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 66.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 65.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 65.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 65.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 65.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 65.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 64.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 64.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 64.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 64.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 63.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 63.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 62.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 62.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 62.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 62.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 62.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 62.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 62.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 61.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 61.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 61.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 61.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 61.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 61.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 60.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 60.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 60.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 60.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 60.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 59.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 59.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 59.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 59.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 59.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 59.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 59.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 59.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 58.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 58.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 58.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 58.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 58.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 57.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 57.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 57.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 57.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 56.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 55.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 55.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 55.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 54.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 54.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 54.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 54.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 54.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 54.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 53.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 53.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 53.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 53.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 53.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 52.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 52.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 52.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 52.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 51.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 51.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 51.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 50.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 50.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 49.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 49.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 49.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 48.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 48.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 48.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 47.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 47.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 46.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 46.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 45.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 45.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 45.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 44.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 44.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 43.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 42.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 41.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 40.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 39.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 39.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 39.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 35.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 41.6
FF:10181-103D1 60 years, female 43.3
FF:10159-103A6 76 years, female 39.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 54.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.1
Samples: 4

Max nTPM: 64.9
Min nTPM: 43.0
Sample A Female 64.9
Sample B Female 43.0
Sample C Male 47.9
Sample D Male 60.5
Ventral spinal cord
nTPM: 54.2
Samples: 4

Max nTPM: 64.6
Min nTPM: 45.5
Sample A Female 51.7
Sample B Female 55.1
Sample C Male 64.6
Sample D Male 45.5

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