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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:652.6 nTPM
HPA:652.6 nTPM
GTEx:436.9 nTPM
FANTOM5:339.3 Scaled Tags Per Million
Pig:89.6 nTPM
Mouse:586.2 nTPM
Allen mouse:15.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 652.6
Sample id Sample description nTPM
Amygdala
nTPM: 622.4
2695 Female, age 67, right hemisphere 707.7
2814 Male, age 76, right hemisphere 646.0
2517 Female, age 94, left hemisphere 604.6
2514 Male, age 75, right hemisphere 585.0
1987 Female, age 91, left hemisphere 568.6
Basal amygdala
nTPM: 615.7
2827 Female, age 67, right hemisphere 638.3
2243 Female, age 91, right hemisphere 636.3
2609 Male, age 75, right hemisphere 634.2
2110 Male, age 80, left hemisphere 617.3
1955 Male, age 76, both hemispheres 594.1
2685 Female, age 94, left hemisphere 574.0
Central amygdala
nTPM: 624.2
2826 Female, age 94, left hemisphere 694.0
1905 Male, age 76, both hemispheres 645.9
2239 Male, age 80, left hemisphere 606.9
2515 Male, age 75, right hemisphere 604.6
2701 Female, age 91, right hemisphere 569.6
Corticomedial amygdala
nTPM: 591.5
2829 Male, age 80, left hemisphere 621.2
2428 Male, age 75, right hemisphere 611.4
2535 Female, age 67, right hemisphere 590.7
2242 Female, age 91, right hemisphere 583.4
2429 Female, age 94, left hemisphere 573.7
2240 Male, age 76, both hemispheres 568.6
Lateral amygdala
nTPM: 652.6
2830 Female, age 67, right hemisphere 733.6
2534 Female, age 94, left hemisphere 704.8
2516 Male, age 75, right hemisphere 661.6
1883 Male, age 76, both hemispheres 621.4
2255 Female, age 91, right hemisphere 617.8
2256 Male, age 80, left hemisphere 576.7
Stria terminalis, bed nucleus
nTPM: 562.8
1974 Female, age 91, both hemispheres 583.4
2486 Female, age 94, both hemispheres 563.4
2201 Male, age 74, unknown 541.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 436.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 436.9
Samples: 152

Max nTPM: 927.6
Min nTPM: 220.6
Std nTPM: 118.2
Median nTPM: 426.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 927.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 827.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 737.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 699.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 688.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 673.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 664.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 656.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 652.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 616.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 612.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 612.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 609.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 607.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 604.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 602.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 591.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 587.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 562.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 562.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 556.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 555.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 546.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 540.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 536.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 533.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 530.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 529.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 529.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 528.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 526.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 525.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 512.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 512.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 512.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 504.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 503.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 500.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 499.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 493.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 492.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 489.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 487.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 484.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 484.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 482.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 480.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 475.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 475.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 474.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 468.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 468.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 467.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 462.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 456.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 456.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 454.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 454.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 454.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 453.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 452.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 452.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 451.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 450.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 450.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 448.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 445.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 444.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 440.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 438.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 437.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 434.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 434.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 434.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 432.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 426.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 426.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 421.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 418.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 417.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 415.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 414.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 414.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 413.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 409.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 408.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 408.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 405.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 404.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 402.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 399.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 397.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 395.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 395.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 395.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 392.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 389.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 387.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 387.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 386.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 385.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 377.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 376.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 371.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 368.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 366.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 361.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 361.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 360.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 358.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 357.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 356.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 356.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 355.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 355.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 352.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 350.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 350.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 348.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 346.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 338.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 334.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 332.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 332.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 329.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 324.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 324.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 322.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 320.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 318.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 314.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 312.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 309.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 309.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 302.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 301.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 296.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 294.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 292.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 291.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 290.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 288.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 275.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 274.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 270.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 269.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 266.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 255.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 249.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 225.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 223.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 220.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 339.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 339.3
FF:10151-102I7 76 years, female 339.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.6
Pig sample Sample description nTPM
Amygdala
nTPM: 89.7
Samples: 4

Max nTPM: 124.1
Min nTPM: 74.9
Sample A Female 124.1
Sample B Female 74.9
Sample C Male 80.6
Sample D Male 79.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 586.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 586.3
Samples: 4

Max nTPM: 640.7
Min nTPM: 533.0
Sample A Male 570.3
Sample B Male 533.0
Sample C Female 640.7
Sample D Female 601.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.0
167 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 15.0
166 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 14.0

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