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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:189.6 nTPM
GTEx:189.6 nTPM
FANTOM5:898.8 Scaled Tags Per Million
Pig:127.7 nTPM
Mouse:1224.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 189.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 189.6
Samples: 105

Max nTPM: 521.0
Min nTPM: 49.4
Std nTPM: 109.8
Median nTPM:
352_1 62 years, male 521.0
218_1 71 years, female 503.7
353_1 82 years, female 482.5
356_1 87 years, female 460.3
163_1 78 years, male 421.2
354_1 81 years, female 420.3
351_1 91 years, male 394.3
321_1 62 years, female 378.1
350_1 84 years, female 375.9
319_1 81 years, male 373.5
355_1 70 years, female 363.9
349_1 83 years, male 357.5
386_1 76 years, male 351.8
452_1 88 years, female 326.3
243_1 75 years, male 319.3
506_1 65 years, male 303.6
377_1 82 years, female 302.5
322_1 76 years, male 280.2
295_1 61 years, female 278.0
177_1 74 years, male 272.6
293_1 68 years, female 271.6
320_1 89 years, female 271.0
172_1 72 years, female 268.1
376_1 75 years, female 264.0
292_1 71 years, male 262.7
286_1 68 years, female 248.7
503_1 68 years, male 243.7
447_1 81 years, male 243.2
237_1 82 years, male 240.9
335_1 73 years, female 234.1
173_1 67 years, male 232.3
99_1 64 years, male 217.8
318_1 68 years, male 217.1
394_1 75 years, female 216.5
251_1 78 years, male 215.1
384_1 83 years, male 214.2
379_1 60 years, male 211.6
317_1 60 years, male 205.3
264_1 73 years, female 200.1
406_1 79 years, male 199.6
316_1 62 years, male 197.6
425_1 59 years, female 196.4
291_1 76 years, male 193.6
517_1 88 years, male 188.1
6_1 73 years, female 186.4
375_1 74 years, female 184.2
348_1 84 years, male 183.4
389_1 86 years, female 178.8
189_1 76 years, male 171.4
17_1 71 years, male 169.0
4_1 88 years, female 165.5
2_1 77 years, female 162.2
404_1 82 years, female 157.3
480_1 63 years, male 154.5
347_1 72 years, male 151.8
396_1 62 years, male 151.0
35_1 74 years, female 147.5
145_1 84 years, male 139.2
229_1 69 years, female 137.2
115_1 83 years, male 137.1
311_1 78 years, male 136.4
265_1 87 years, male 135.7
526_1 61 years, male 133.8
405_1 91 years, male 132.8
153_1 70 years, female 132.6
246_1 77 years, male 128.6
9_1 66 years, female 128.2
254_1 77 years, female 126.2
120_1 70 years, female 124.5
468_1 89 years, male 123.0
266_1 85 years, male 118.5
137_1 83 years, male 114.7
324_1 76 years, male 112.3
18_1 88 years, male 111.7
314_1 67 years, male 110.0
42_1 85 years, male 109.2
518_1 75 years, female 108.6
288_1 66 years, female 107.9
139_1 64 years, female 105.9
499_1 55 years, female 105.0
41_1 94 years, female 104.1
217_1 76 years, male 104.1
126_1 63 years, male 103.9
315_1 62 years, female 101.2
307_1 66 years, female 98.2
109_1 81 years, female 96.8
142_1 61 years, female 96.5
313_1 79 years, female 90.4
32_1 67 years, male 89.2
119_1 70 years, female 88.3
117_1 61 years, male 85.1
43_1 64 years, female 78.3
495_1 57 years, female 75.2
89_1 63 years, male 74.3
81_1 67 years, male 73.8
501_1 88 years, male 71.4
415_1 77 years, female 70.5
491_1 89 years, female 67.9
466_1 57 years, female 67.6
490_1 67 years, female 65.4
162_1 79 years, female 63.4
308_1 70 years, female 59.0
149_1 88 years, male 55.3
414_1 84 years, female 52.4
413_1 59 years, female 49.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 898.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 898.8
FF:10030-101E3 24-65 years, mixed 898.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 127.7
Pig sample Sample description nTPM
Retina
nTPM: 127.7
Samples: 4

Max nTPM: 151.2
Min nTPM: 106.2
Sample A Female 117.4
Sample B Female 136.0
Sample C Male 151.2
Sample D Male 106.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1224.6
Mouse sample Sample description nTPM
Retina
nTPM: 1224.6
Samples: 4

Max nTPM: 1571.3
Min nTPM: 995.1
Sample A Male 1224.1
Sample B Male 1107.8
Sample C Female 1571.3
Sample D Female 995.1

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by the Knut & Alice Wallenberg Foundation.