MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:611.2 nTPM
HPA:611.2 nTPM
GTEx:447.5 nTPM
FANTOM5:250.3 Scaled Tags Per Million
Pig:179.0 nTPM
Mouse:511.7 nTPM
Allen mouse:14.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 611.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 576.1
2019 Male, age 18, unknown 654.7
2666 Male, age 74, left hemisphere 616.4
2828 Female, age 72, unknown 597.0
2586 Male, age 75, left hemisphere 587.1
2411 Female, age 72, unknown 560.4
1827 Male, age 72, unknown 555.6
1870 Female, age 42, unknown 554.5
1830 Male, age 51, unknown 551.2
1833 Male, age 53, unknown 551.1
2219 Male, age 76, both hemispheres 533.5
Dorsal raphe nucleus
nTPM: 557.3
2750 Male, age 76, both hemispheres 574.6
2298 Female, age 72, unknown 564.4
1828 Male, age 53, unknown 563.2
2047 Male, age 72, unknown 553.4
2016 Female, age 72, unknown 530.8
Inferior colliculus
nTPM: 560.5
2097 Female, age 72, unknown 593.1
1890 Male, age 53, unknown 566.4
1848 Female, age 42, unknown 551.8
2849 Male, age 72, unknown 530.6
Median raphe nucleus
nTPM: 566.7
2220 Male, age 76, midline 566.7
Pedunculopontine tegmental nucleus
nTPM: 549.4
1921 Female, age 85, both hemispheres 562.3
2334 Male, age 80, both hemispheres 555.7
2338 Male, age 61, both hemispheres 530.0
Periaquaductal grey, anterior
nTPM: 574.6
2502 Female, age 75, unknown 598.6
1795 Male, age 51, unknown 578.0
1947 Male, age 18, unknown 547.1
Periaquaductal grey, dorsal
nTPM: 526.0
2464 Female, age 72, unknown 544.0
1831 Male, age 72, unknown 523.8
2850 Male, age 76, both hemispheres 519.1
1840 Male, age 53, unknown 516.8
Periaquaductal grey, lateral
nTPM: 529.3
2272 Male, age 74, both hemispheres 541.2
2140 Male, age 76, both hemispheres 527.5
2053 Male, age 18, unknown 519.2
Pretectal area
nTPM: 580.7
1817 Female, age 42, unknown 681.1
2007 Male, age 72, unknown 668.5
1944 Female, age 72, unknown 629.9
1816 Male, age 51, unknown 611.8
1815 Male, age 53, unknown 600.2
2667 Female, age 75, unknown 574.9
2224 Female, age 72, unknown 541.0
2316 Male, age 76, right hemisphere 537.9
2825 Male, age 18, unknown 523.0
2273 Male, age 74, both hemispheres 513.2
2407 Male, age 75, both hemispheres 506.2
Red nucleus
nTPM: 611.2
2588 Male, age 74, left hemisphere 672.6
2785 Male, age 18, unknown 656.0
1904 Male, age 53, unknown 624.4
1954 Female, age 42, unknown 623.0
1821 Female, age 72, unknown 616.0
2503 Female, age 72, unknown 614.5
2227 Male, age 72, unknown 610.5
2769 Male, age 72, unknown 608.7
1865 Male, age 51, unknown 604.3
2823 Male, age 76, right hemisphere 592.1
2725 Female, age 75, unknown 574.8
2584 Male, age 75, left hemisphere 537.9
Substantia nigra
nTPM: 582.2
2665 Male, age 74, both hemispheres 628.6
1916 Female, age 42, unknown 628.3
1889 Female, age 72, unknown 622.7
1851 Male, age 51, unknown 605.6
2590 Female, age 75, unknown 578.3
1941 Male, age 53, unknown 566.7
2241 Male, age 72, unknown 554.6
2699 Male, age 18, unknown 551.1
2409 Female, age 72, unknown 547.3
2583 Male, age 75, right hemisphere 538.5
Superior colliculus
nTPM: 562.8
2087 Female, age 72, unknown 627.1
1796 Male, age 53, unknown 586.0
2261 Male, age 18, unknown 585.2
2668 Female, age 75, unknown 565.0
1995 Male, age 72, unknown 563.8
1913 Female, age 42, unknown 558.1
2587 Male, age 74, left hemisphere 551.6
2664 Male, age 75, both hemispheres 534.8
1839 Male, age 51, unknown 529.6
1895 Male, age 76, right hemisphere 527.0
Ventral tegmental area
nTPM: 566.6
2218 Male, age 76, both hemispheres 580.4
2410 Female, age 72, unknown 580.0
1915 Female, age 42, unknown 577.6
1942 Male, age 51, unknown 564.6
2223 Female, age 72, unknown 559.5
2021 Male, age 53, unknown 537.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 447.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 447.5
Samples: 139

Max nTPM: 1650.1
Min nTPM: 217.7
Std nTPM: 192.3
Median nTPM: 405.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1650.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1206.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1110.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 992.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 894.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 889.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 884.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 855.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 733.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 712.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 647.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 250.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 250.3
FF:10158-103A5 76 years, female 250.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 179.0
Pig sample Sample description nTPM
Midbrain
nTPM: 163.4
Samples: 4

Max nTPM: 203.5
Min nTPM: 118.8
Sample A Female 203.5
Sample B Female 118.8
Sample C Male 196.6
Sample D Male 134.6
Periaqueductal gray
nTPM: 117.5
Samples: 3

Max nTPM: 133.2
Min nTPM: 108.6
Sample B Female 110.6
Sample C Male 133.2
Sample D Male 108.6
Substantia nigra
nTPM: 139.9
Samples: 4

Max nTPM: 164.7
Min nTPM: 119.3
Sample A Female 164.7
Sample B Female 119.3
Sample C Male 145.9
Sample D Male 129.5
Superior colliculi
nTPM: 178.9
Samples: 4

Max nTPM: 196.9
Min nTPM: 159.6
Sample A Female 190.9
Sample B Female 159.6
Sample C Male 196.9
Sample D Male 168.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 511.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 511.7
Samples: 4

Max nTPM: 535.2
Min nTPM: 485.0
Sample A Male 531.0
Sample B Male 495.7
Sample C Female 485.0
Sample D Female 535.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.5
167 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 14.5
166 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 13.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.