BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:80.0 nTPM
HPA:80.0 nTPM
GTEx:48.2 nTPM
FANTOM5:124.9 Scaled Tags Per Million
Pig:48.6 nTPM
Mouse:52.8 nTPM
Allen mouse:2.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA052607
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 80.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 62.0
2289 Male, age 61, right hemisphere 66.4
2846 Female, age 79, unknown 64.7
2290 Female, age 72, unknown 62.9
1854 Male, age 80, left hemisphere 62.8
1781 Male, age 74, unknown 62.4
2481 Female, age 94, left hemisphere 59.6
1857 Female, age 85, left hemisphere 59.1
2288 Male, age 75, left hemisphere 58.1
Claustrum
nTPM: 62.1
2292 Female, age 85, both hemispheres 73.0
1956 Male, age 74, unknown 64.3
2645 Female, age 72, unknown 62.3
2196 Female, age 79, unknown 61.0
2392 Female, age 94, both hemispheres 60.4
2284 Female, age 91, both hemispheres 60.2
2568 Male, age 61, both hemispheres 60.2
2198 Male, age 80, both hemispheres 59.3
2491 Male, age 75, both hemispheres 58.6
Globus pallidus, externus
nTPM: 80.0
2567 Female, age 72, unknown 91.4
2646 Male, age 61, right hemisphere 82.9
1996 Male, age 80, right hemisphere 81.2
2772 Female, age 79, unknown 74.8
2395 Male, age 75, both hemispheres 69.8
Globus pallidus, internus
nTPM: 79.3
2111 Female, age 85, right hemisphere 90.7
2566 Female, age 72, unknown 84.4
1818 Male, age 74, unknown 81.3
2778 Female, age 91, both hemispheres 79.8
2037 Male, age 80, right hemisphere 78.7
2483 Female, age 94, right hemisphere 70.3
2287 Male, age 75, right hemisphere 69.5
Nucleus accumbens
nTPM: 63.4
2391 Female, age 94, left hemisphere 70.2
2732 Male, age 80, right hemisphere 67.2
1783 Male, age 74, unknown 65.7
2698 Female, age 72, unknown 65.4
1806 Female, age 85, left hemisphere 62.4
2824 Male, age 61, right hemisphere 61.7
2286 Male, age 75, left hemisphere 60.7
1856 Female, age 91, right hemisphere 53.6
Nucleus basalis of Meynert
nTPM: 68.3
2569 Male, age 61, both hemispheres 85.3
2393 Male, age 80, right hemisphere 65.6
2484 Female, age 94, left hemisphere 62.7
2821 Male, age 75, both hemispheres 59.6
Nucleus of the diagonal band
nTPM: 53.5
1979 Male, age 74, unknown 56.1
2195 Female, age 85, both hemispheres 54.9
2029 Male, age 61, right hemisphere 54.2
1812 Female, age 91, both hemispheres 51.2
2775 Male, age 80, right hemisphere 51.0
Olfactory tubercle
nTPM: 53.8
1846 Male, age 80, right hemisphere 55.6
2856 Male, age 75, right hemisphere 54.5
2487 Female, age 94, left hemisphere 53.6
1998 Female, age 91, both hemispheres 51.6
Putamen
nTPM: 67.3
2489 Female, age 72, unknown 76.5
1829 Male, age 74, unknown 74.3
2647 Male, age 75, left hemisphere 70.8
2466 Female, age 79, unknown 67.0
2482 Female, age 94, left hemisphere 66.9
1937 Female, age 91, right hemisphere 59.4
1838 Male, age 80, right hemisphere 56.5
Septal nuclei
nTPM: 58.7
2394 Male, age 61, left hemisphere 69.9
2199 Male, age 80, right hemisphere 65.3
2059 Female, age 85, both hemispheres 63.9
2031 Female, age 72, unknown 54.7
1960 Male, age 74, unknown 52.9
2629 Female, age 94, right hemisphere 52.3
2009 Female, age 91, both hemispheres 52.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.9
Samples: 246

Max nTPM: 83.0
Min nTPM: 21.0
Std nTPM: 11.7
Median nTPM: 45.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 83.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 78.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 78.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 77.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 77.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 75.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 74.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 73.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 72.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 70.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 69.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.1
Samples: 246

Max nTPM: 78.1
Min nTPM: 21.5
Std nTPM: 10.4
Median nTPM: 39.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 78.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 77.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 76.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 75.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 72.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 71.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 70.4
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 68.7
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 64.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 64.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 63.3
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Brain - Putamen (basal ganglia)
Average nTPM: 48.2
Samples: 205

Max nTPM: 89.7
Min nTPM: 26.1
Std nTPM: 11.6
Median nTPM: 46.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 89.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 83.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 78.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 77.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 74.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 74.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 72.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 70.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 70.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 69.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 69.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.9
FF:10164-103B2 76 years, female 124.9
Globus pallidus
Scaled Tags Per Million: 101.8
FF:10161-103A8 76 years, female 154.6
FF:10175-103C4 60 years, female 48.9
Nucleus accumbens
Scaled Tags Per Million: 84.4
FF:10037-101F1 23-56 years, mixed 84.4
Putamen
Scaled Tags Per Million: 82.2
FF:10176-103C5 60 years, female 82.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 48.6
Pig sample Sample description nTPM
Caudate
nTPM: 43.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 39.6
Sample A Female 39.6
Sample B Female 46.7
Sample C Male 45.1
Sample D Male 44.1
Putamen
nTPM: 48.6
Samples: 4

Max nTPM: 57.7
Min nTPM: 41.6
Sample A Female 57.7
Sample B Female 41.6
Sample C Male 42.8
Sample D Male 52.4
Septum
nTPM: 47.3
Samples: 4

Max nTPM: 48.5
Min nTPM: 44.8
Sample A Female 48.5
Sample B Female 47.4
Sample C Male 44.8
Sample D Male 48.4
Ventral pallidum
nTPM: 47.7
Samples: 4

Max nTPM: 53.3
Min nTPM: 38.9
Sample A Female 38.9
Sample B Female 45.8
Sample C Male 53.3
Sample D Male 52.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 52.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 52.8
Samples: 4

Max nTPM: 56.4
Min nTPM: 50.5
Sample A Male 53.2
Sample B Male 56.4
Sample C Female 50.5
Sample D Female 51.2
Septum
nTPM: 35.1
Samples: 4

Max nTPM: 38.6
Min nTPM: 32.3
Sample A Male 35.7
Sample B Male 33.9
Sample C Female 32.3
Sample D Female 38.6
Ventral forebrain
nTPM: 39.5
Samples: 4

Max nTPM: 42.6
Min nTPM: 35.6
Sample A Male 42.6
Sample B Male 39.2
Sample C Female 35.6
Sample D Female 40.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.8
68498986 Antisense, RP_050113_02_G04, Mouse strain C57BL/6J (56 days, male) 2.8
Pallidum
Expression energy: 1.7
68498986 Antisense, RP_050113_02_G04, Mouse strain C57BL/6J (56 days, male) 1.7

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