MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.6 nTPM
HPA:80.6 nTPM
GTEx:44.3 nTPM
FANTOM5:155.7 Scaled Tags Per Million
Pig:60.8 nTPM
Mouse:34.7 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.8
2586 Male, age 75, left hemisphere 99.2
1833 Male, age 53, unknown 78.7
1830 Male, age 51, unknown 77.9
2828 Female, age 72, unknown 76.5
1870 Female, age 42, unknown 74.6
2666 Male, age 74, left hemisphere 72.7
2019 Male, age 18, unknown 72.2
2411 Female, age 72, unknown 71.6
1827 Male, age 72, unknown 67.2
2219 Male, age 76, both hemispheres 67.1
Dorsal raphe nucleus
nTPM: 65.9
2750 Male, age 76, both hemispheres 72.6
1828 Male, age 53, unknown 69.4
2016 Female, age 72, unknown 68.2
2047 Male, age 72, unknown 63.6
2298 Female, age 72, unknown 56.0
Inferior colliculus
nTPM: 66.5
1890 Male, age 53, unknown 69.1
2849 Male, age 72, unknown 68.4
1848 Female, age 42, unknown 68.1
2097 Female, age 72, unknown 60.1
Median raphe nucleus
nTPM: 53.5
2220 Male, age 76, midline 53.5
Pedunculopontine tegmental nucleus
nTPM: 64.8
2338 Male, age 61, both hemispheres 66.7
2334 Male, age 80, both hemispheres 65.5
1921 Female, age 85, both hemispheres 62.4
Periaquaductal grey, anterior
nTPM: 65.8
2502 Female, age 75, unknown 69.0
1947 Male, age 18, unknown 66.1
1795 Male, age 51, unknown 62.3
Periaquaductal grey, dorsal
nTPM: 63.5
2464 Female, age 72, unknown 66.7
1831 Male, age 72, unknown 64.5
2850 Male, age 76, both hemispheres 64.4
1840 Male, age 53, unknown 58.6
Periaquaductal grey, lateral
nTPM: 66.4
2053 Male, age 18, unknown 71.7
2140 Male, age 76, both hemispheres 69.0
2272 Male, age 74, both hemispheres 58.5
Pretectal area
nTPM: 65.8
2407 Male, age 75, both hemispheres 79.1
2316 Male, age 76, right hemisphere 75.7
1815 Male, age 53, unknown 72.3
1817 Female, age 42, unknown 69.0
2667 Female, age 75, unknown 65.5
2825 Male, age 18, unknown 65.2
2007 Male, age 72, unknown 63.0
1816 Male, age 51, unknown 60.5
1944 Female, age 72, unknown 60.1
2273 Male, age 74, both hemispheres 59.2
2224 Female, age 72, unknown 54.0
Red nucleus
nTPM: 80.6
1865 Male, age 51, unknown 86.5
1904 Male, age 53, unknown 86.3
2584 Male, age 75, left hemisphere 84.3
2769 Male, age 72, unknown 83.9
2227 Male, age 72, unknown 83.2
1821 Female, age 72, unknown 82.0
2588 Male, age 74, left hemisphere 81.5
1954 Female, age 42, unknown 80.0
2785 Male, age 18, unknown 79.0
2823 Male, age 76, right hemisphere 77.4
2503 Female, age 72, unknown 75.1
2725 Female, age 75, unknown 67.7
Substantia nigra
nTPM: 67.7
2583 Male, age 75, right hemisphere 76.2
2699 Male, age 18, unknown 75.6
2590 Female, age 75, unknown 74.9
2665 Male, age 74, both hemispheres 71.0
2409 Female, age 72, unknown 69.3
1851 Male, age 51, unknown 66.7
1889 Female, age 72, unknown 65.5
2241 Male, age 72, unknown 60.6
1916 Female, age 42, unknown 59.1
1941 Male, age 53, unknown 58.4
Superior colliculus
nTPM: 72.8
1995 Male, age 72, unknown 85.7
1913 Female, age 42, unknown 83.1
2664 Male, age 75, both hemispheres 81.1
1895 Male, age 76, right hemisphere 73.5
1839 Male, age 51, unknown 73.2
2668 Female, age 75, unknown 72.8
2587 Male, age 74, left hemisphere 66.6
1796 Male, age 53, unknown 66.1
2087 Female, age 72, unknown 63.2
2261 Male, age 18, unknown 62.3
Ventral tegmental area
nTPM: 67.7
2410 Female, age 72, unknown 73.8
2223 Female, age 72, unknown 72.2
1942 Male, age 51, unknown 69.1
2021 Male, age 53, unknown 67.9
1915 Female, age 42, unknown 61.8
2218 Male, age 76, both hemispheres 61.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.3
Samples: 139

Max nTPM: 87.0
Min nTPM: 18.2
Std nTPM: 12.0
Median nTPM: 43.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 87.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 79.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 79.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 76.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 68.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 67.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 66.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 65.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 64.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 63.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 63.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 155.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.7
FF:10158-103A5 76 years, female 155.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.8
Pig sample Sample description nTPM
Midbrain
nTPM: 55.0
Samples: 4

Max nTPM: 73.0
Min nTPM: 45.0
Sample A Female 73.0
Sample B Female 56.3
Sample C Male 45.6
Sample D Male 45.0
Periaqueductal gray
nTPM: 51.3
Samples: 3

Max nTPM: 57.9
Min nTPM: 46.5
Sample B Female 57.9
Sample C Male 46.5
Sample D Male 49.5
Substantia nigra
nTPM: 60.9
Samples: 4

Max nTPM: 72.3
Min nTPM: 51.1
Sample A Female 56.0
Sample B Female 64.0
Sample C Male 51.1
Sample D Male 72.3
Superior colliculi
nTPM: 54.5
Samples: 4

Max nTPM: 59.0
Min nTPM: 47.6
Sample A Female 54.5
Sample B Female 59.0
Sample C Male 47.6
Sample D Male 56.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 37.4
Min nTPM: 32.0
Sample A Male 37.4
Sample B Male 34.6
Sample C Female 32.0
Sample D Female 34.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
68498986 Antisense, RP_050113_02_G04, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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