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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1154.3 nTPM
HPA:1154.3 nTPM
FANTOM5:914.5 Scaled Tags Per Million
Mouse:363.2 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 1154.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1095.6
2090 Male, age 80, both hemispheres 1155.0
2188 Female, age 91, both hemispheres 1139.5
1984 Male, age 76, both hemispheres 1050.5
2301 Female, age 85, both hemispheres 1037.6
Area postrema
nTPM: 1121.4
2306 Male, age 80, both hemispheres 1180.5
2799 Male, age 61, both hemispheres 1154.4
2054 Male, age 76, both hemispheres 1029.3
Cuneate nuclei
nTPM: 1055.7
2376 Male, age 61, both hemispheres 1073.7
2381 Male, age 80, both hemispheres 1063.4
2131 Male, age 76, both hemispheres 1030.0
Dorsal cochlear nucleus
nTPM: 1091.0
2187 Female, age 91, both hemispheres 1120.7
2802 Male, age 74, right hemisphere 1099.4
2370 Male, age 61, both hemispheres 1095.0
2378 Male, age 80, both hemispheres 1078.8
2058 Male, age 76, both hemispheres 1061.4
Dorsal medullary reticular nucleus
nTPM: 1067.0
2373 Male, age 61, both hemispheres 1089.7
2040 Female, age 85, both hemispheres 1063.9
2088 Male, age 76, both hemispheres 1047.5
Dorsal motor vagal complex
nTPM: 1102.2
2797 Male, age 61, both hemispheres 1207.8
2643 Male, age 74, both hemispheres 1143.7
2807 Female, age 85, both hemispheres 1118.6
2844 Male, age 55, unknown 1077.8
2133 Female, age 91, both hemispheres 1077.0
2000 Male, age 74, unknown 1076.6
2185 Male, age 76, both hemispheres 1068.2
2813 Female, age 72, unknown 1048.3
Dorsal tegmental nucleus
nTPM: 1086.9
2083 Male, age 80, both hemispheres 1119.7
2326 Male, age 74, both hemispheres 1107.5
1936 Male, age 76, left hemisphere 1063.0
2358 Male, age 61, both hemispheres 1057.4
Dorsolateral tegmental area
nTPM: 1096.8
2654 Male, age 80, both hemispheres 1142.0
2337 Male, age 61, both hemispheres 1132.9
2751 Female, age 85, both hemispheres 1105.0
2360 Male, age 74, both hemispheres 1072.5
2141 Male, age 76, both hemispheres 1031.8
Gigantocellular reticular nuclei, medullary
nTPM: 1072.0
2314 Male, age 61, both hemispheres 1120.8
1876 Female, age 85, both hemispheres 1073.0
2022 Male, age 76, right hemisphere 1072.7
2310 Male, age 80, both hemispheres 1066.1
2387 Female, age 91, both hemispheres 1059.0
2462 Male, age 74, both hemispheres 1040.3
Gigantocellular reticular nuclei, pars
nTPM: 1045.0
2084 Female, age 85, both hemispheres 1076.1
2706 Male, age 80, both hemispheres 1044.2
2336 Male, age 61, both hemispheres 1042.5
2330 Male, age 80, both hemispheres 1033.2
2168 Male, age 76, both hemispheres 1028.9
Inferior olive
nTPM: 1104.7
2563 Male, age 74, both hemispheres 1123.6
2085 Female, age 85, both hemispheres 1119.0
2178 Male, age 61, both hemispheres 1118.0
2379 Male, age 80, both hemispheres 1088.9
2628 Female, age 91, both hemispheres 1074.2
Kolliker-Fuse nucleus
nTPM: 1093.6
2315 Male, age 76, right hemisphere 1142.4
2163 Male, age 80, both hemispheres 1074.2
2793 Female, age 91, left hemisphere 1064.1
Lateral lemniscal nuclei
nTPM: 1040.0
2746 Female, age 85, left hemisphere 1064.3
2320 Female, age 91, left hemisphere 1043.4
2453 Male, age 74, right hemisphere 1033.8
2169 Male, age 76, both hemispheres 1031.5
2036 Male, age 80, both hemispheres 1027.0
Lateral medullary reticular nucleus
nTPM: 1106.1
2852 Male, age 80, both hemispheres 1168.2
2190 Female, age 85, both hemispheres 1122.9
2804 Female, age 91, both hemispheres 1108.9
2305 Male, age 74, both hemispheres 1108.3
2374 Male, age 61, both hemispheres 1066.7
2044 Male, age 76, both hemispheres 1061.7
Lateral parabrachial nucleus
nTPM: 1102.0
2792 Male, age 76, both hemispheres 1124.0
2013 Male, age 80, both hemispheres 1116.5
2139 Female, age 85, right hemisphere 1087.5
2790 Male, age 61, both hemispheres 1080.1
Lateral vestibular nucleus
nTPM: 1071.3
2311 Male, age 80, both hemispheres 1102.8
2184 Male, age 76, both hemispheres 1039.8
Locus coeruleus
nTPM: 1044.7
2123 Female, age 91, both hemispheres 1062.4
2162 Male, age 80, both hemispheres 1062.1
2720 Male, age 74, both hemispheres 1058.9
2317 Female, age 72, unknown 1054.1
1980 Male, age 76, both hemispheres 1036.5
2014 Male, age 55, unknown 1033.2
2788 Male, age 74, unknown 1005.8
Medial olivary nucleus
nTPM: 1154.3
1943 Male, age 61, both hemispheres 1193.5
1962 Male, age 76, both hemispheres 1181.1
2138 Female, age 91, both hemispheres 1154.9
2851 Male, age 80, both hemispheres 1087.6
Medial parabrachial nucleus
nTPM: 1080.4
2170 Female, age 91, both hemispheres 1136.2
2463 Female, age 85, right hemisphere 1086.0
2156 Male, age 61, both hemispheres 1070.7
2786 Male, age 76, both hemispheres 1058.1
2854 Male, age 80, both hemispheres 1050.9
Medial periolivary nuclei
nTPM: 1061.3
2081 Male, age 80, both hemispheres 1117.2
2063 Male, age 76, both hemispheres 1085.2
2458 Female, age 91, both hemispheres 1056.6
2791 Male, age 74, right hemisphere 1037.7
2171 Female, age 85, both hemispheres 1010.0
Medial vestibular nucleus
nTPM: 1060.8
2743 Female, age 85, both hemispheres 1078.4
2093 Male, age 80, both hemispheres 1076.1
2803 Female, age 91, both hemispheres 1071.2
2801 Male, age 74, both hemispheres 1049.6
2624 Male, age 61, both hemispheres 1048.2
2134 Male, age 76, both hemispheres 1041.2
Motor facial nucleus
nTPM: 1046.5
2126 Male, age 61, both hemispheres 1089.8
2062 Male, age 76, both hemispheres 1067.4
2795 Female, age 91, both hemispheres 1052.4
2365 Male, age 74, right hemisphere 1043.2
2697 Female, age 85, both hemispheres 1030.1
2327 Male, age 80, both hemispheres 996.0
Motor hypoglossal nucleus
nTPM: 1069.8
2182 Male, age 80, both hemispheres 1119.9
2132 Female, age 85, both hemispheres 1109.5
2125 Female, age 91, both hemispheres 1091.8
2277 Male, age 76, both hemispheres 1041.8
2461 Male, age 61, both hemispheres 985.9
Motor trigeminal nucleus
nTPM: 1071.9
2335 Male, age 61, both hemispheres 1109.7
2321 Female, age 91, both hemispheres 1072.9
2309 Male, age 76, both hemispheres 1072.7
2560 Male, age 74, both hemispheres 1061.3
2079 Male, age 80, both hemispheres 1043.0
Nuclei of the trapezoid body
nTPM: 1052.4
1983 Male, age 76, both hemispheres 1105.7
2166 Male, age 80, both hemispheres 1061.9
2368 Female, age 91, both hemispheres 1039.9
2159 Male, age 61, both hemispheres 1033.5
2735 Female, age 85, both hemispheres 1020.8
Nucleus ambiguus
nTPM: 1110.1
2071 Male, age 76, both hemispheres 1150.9
2096 Female, age 85, both hemispheres 1069.4
Nucleus cuneatus
nTPM: 1086.6
2808 Female, age 85, both hemispheres 1130.8
2564 Male, age 74, both hemispheres 1090.2
2380 Male, age 80, both hemispheres 1087.7
2805 Female, age 91, both hemispheres 1086.1
2562 Male, age 61, both hemispheres 1080.4
2100 Male, age 76, both hemispheres 1044.1
Nucleus gracilis
nTPM: 1120.4
2299 Female, age 85, both hemispheres 1149.1
2382 Male, age 80, both hemispheres 1128.0
2627 Male, age 74, both hemispheres 1084.0
Nucleus raphe magnus
nTPM: 1035.4
2459 Female, age 91, both hemispheres 1060.2
2051 Male, age 76, both hemispheres 1051.6
2455 Male, age 74, both hemispheres 1035.6
2328 Male, age 80, both hemispheres 1032.2
2160 Male, age 61, both hemispheres 1019.9
2172 Female, age 85, both hemispheres 1013.0
Nucleus raphe obscurus
nTPM: 1138.0
2142 Male, age 76, midline 1171.0
2800 Male, age 61, midline 1122.5
2845 Female, age 85, midline 1120.4
Nucleus raphe pallidus
nTPM: 1130.4
1924 Male, age 61, midline 1167.9
2145 Male, age 76, midline 1114.6
2183 Male, age 80, midline 1108.6
Nucleus tractus solitarii
nTPM: 1062.4
2191 Female, age 85, both hemispheres 1098.9
2144 Female, age 91, right hemisphere 1066.0
2656 Male, age 76, both hemispheres 1042.9
2307 Male, age 80, both hemispheres 1041.8
Paramedian reticular nucleus
nTPM: 1072.1
2057 Male, age 80, both hemispheres 1100.1
2052 Male, age 76, both hemispheres 1082.4
2313 Male, age 61, both hemispheres 1065.9
2050 Female, age 85, both hemispheres 1040.1
Parvicellular reticular nuclei
nTPM: 1074.1
2119 Male, age 80, both hemispheres 1099.2
2095 Male, age 76, both hemispheres 1092.3
2558 Male, age 74, both hemispheres 1030.8
Parvicellular reticular nuclei, medullary
nTPM: 1073.3
2091 Female, age 85, both hemispheres 1084.8
2189 Female, age 91, both hemispheres 1068.9
2181 Male, age 80, left hemisphere 1066.4
Peritrigeminal nucleus
nTPM: 1124.9
2067 Female, age 85, both hemispheres 1187.7
2136 Male, age 76, both hemispheres 1119.6
2179 Male, age 61, both hemispheres 1067.4
Pontine nuclei
nTPM: 1075.4
2319 Female, age 91, both hemispheres 1105.0
2115 Male, age 80, left hemisphere 1099.5
1968 Male, age 76, left hemisphere 1088.4
2109 Female, age 72, unknown 1087.3
2454 Male, age 74, left hemisphere 1081.8
1863 Male, age 55, unknown 1071.4
2727 Male, age 61, right hemisphere 1039.0
2787 Female, age 85, both hemispheres 1031.0
Pontine raphe nucleus
nTPM: 1044.2
2122 Female, age 85, midline 1050.1
2853 Male, age 76, midline 1038.3
Posteroventral cochlear nucleus
nTPM: 1139.4
2135 Female, age 91, both hemispheres 1219.9
2341 Male, age 80, both hemispheres 1164.9
2371 Male, age 61, both hemispheres 1128.2
2070 Male, age 76, both hemispheres 1097.4
2752 Female, age 85, both hemispheres 1086.8
Prepositus hypoglossal nucleus
nTPM: 1104.7
2086 Male, age 80, both hemispheres 1108.2
2855 Female, age 85, right hemisphere 1101.3
Principal sensory trigeminal nucleus
nTPM: 1046.5
2158 Male, age 61, both hemispheres 1069.3
2367 Female, age 91, left hemisphere 1057.4
2324 Male, age 76, both hemispheres 1031.1
2008 Male, age 80, left hemisphere 1028.2
Reticular pontine nucleus, caudal
nTPM: 1071.8
2559 Male, age 74, both hemispheres 1095.4
2092 Male, age 76, both hemispheres 1088.3
2457 Female, age 91, both hemispheres 1084.6
2332 Male, age 80, right hemisphere 1018.7
Reticular pontine nucleus, oral
nTPM: 1070.0
2361 Male, age 74, both hemispheres 1090.6
2366 Female, age 91, both hemispheres 1088.6
1939 Male, age 80, both hemispheres 1071.3
2167 Male, age 76, both hemispheres 1058.4
2012 Female, age 85, both hemispheres 1041.1
Reticulotegmental nucleus
nTPM: 1062.4
2452 Male, age 74, both hemispheres 1117.1
2322 Female, age 91, both hemispheres 1057.8
2333 Male, age 80, both hemispheres 1050.7
2325 Male, age 76, both hemispheres 1023.9
Spinal trigeminal nucleus, caudal
nTPM: 1067.7
2642 Male, age 74, both hemispheres 1094.6
2308 Male, age 80, both hemispheres 1088.6
2447 Male, age 76, both hemispheres 1060.6
2312 Male, age 61, both hemispheres 1050.2
2390 Female, age 91, both hemispheres 1044.4
Spinal trigeminal nucleus, interpolar
nTPM: 1060.3
2033 Male, age 80, both hemispheres 1084.4
2066 Male, age 76, right hemisphere 1080.2
2386 Female, age 85, both hemispheres 1070.5
2389 Female, age 91, both hemispheres 1045.9
2625 Male, age 61, both hemispheres 1020.3
Spinal trigeminal nucleus, oral
nTPM: 1059.4
2164 Male, age 80, both hemispheres 1071.9
1978 Male, age 76, both hemispheres 1064.8
2737 Female, age 85, both hemispheres 1041.7
Spinal vestibular nucleus
nTPM: 1111.7
2384 Male, age 74, both hemispheres 1175.9
2780 Male, age 80, both hemispheres 1114.4
2748 Male, age 76, both hemispheres 1112.7
2806 Female, age 85, both hemispheres 1100.4
2796 Male, age 61, both hemispheres 1085.2
2186 Female, age 91, both hemispheres 1081.4
Subcoeruleus area
nTPM: 1072.0
2451 Male, age 74, both hemispheres 1140.7
2369 Female, age 85, left hemisphere 1099.9
2089 Male, age 76, left hemisphere 1049.4
1958 Male, age 80, both hemispheres 1041.4
2323 Female, age 91, left hemisphere 1028.5
Superior olive
nTPM: 1046.9
2020 Male, age 76, both hemispheres 1093.0
2561 Female, age 91, both hemispheres 1054.7
2364 Male, age 74, right hemisphere 1047.5
2329 Male, age 80, right hemisphere 1020.8
1875 Female, age 85, both hemispheres 1018.6
Superior vestibular nucleus
nTPM: 1095.7
2015 Male, age 80, both hemispheres 1115.1
2061 Male, age 76, both hemispheres 1095.2
2383 Male, age 74, both hemispheres 1076.9
Ventral medullary reticular nucleus
nTPM: 1093.9
2372 Male, age 61, both hemispheres 1111.9
2060 Male, age 76, both hemispheres 1076.0
Ventral periolivary nuclei
nTPM: 1046.8
2023 Male, age 76, both hemispheres 1091.7
2165 Male, age 80, both hemispheres 1049.9
2794 Female, age 91, left hemisphere 1049.9
2130 Female, age 85, both hemispheres 995.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1118.4
2118 Male, age 80, both hemispheres 1164.8
2302 Female, age 91, both hemispheres 1116.0
2741 Female, age 85, both hemispheres 1111.4
1986 Male, age 76, both hemispheres 1109.4
2180 Male, age 61, both hemispheres 1090.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1050.4
2456 Female, age 91, both hemispheres 1075.4
2161 Male, age 80, both hemispheres 1069.8
1959 Male, age 76, both hemispheres 1049.7
2359 Male, age 61, both hemispheres 1047.1
2449 Male, age 74, both hemispheres 1032.5
2840 Female, age 85, both hemispheres 1028.1

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 914.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 914.5
FF:10182-103D2 60 years, female 1106.5
FF:10165-103B3 76 years, female 722.5
Medulla oblongata
Scaled Tags Per Million: 753.4
FF:10174-103C3 60 years, female 902.1
FF:10038-101F2 18-64 years, mixed 761.8
FF:10155-103A2 76 years, female 596.3
Pons
Scaled Tags Per Million: 498.1
FF:10033-101E6 18-54 years, mixed 498.1

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 363.2
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 363.2
Samples: 4

Max nTPM: 426.5
Min nTPM: 304.7
Sample A Male 426.5
Sample B Male 304.7
Sample C Female 396.3
Sample D Female 325.3

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