MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.8 nTPM
HPA:64.8 nTPM
GTEx:60.2 nTPM
FANTOM5:134.7 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:99.6 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.0
2586 Male, age 75, left hemisphere 77.8
2666 Male, age 74, left hemisphere 64.1
1870 Female, age 42, unknown 62.5
2019 Male, age 18, unknown 60.9
1827 Male, age 72, unknown 60.2
1833 Male, age 53, unknown 60.2
1830 Male, age 51, unknown 60.1
2411 Female, age 72, unknown 60.1
2828 Female, age 72, unknown 59.3
2219 Male, age 76, both hemispheres 54.6
Dorsal raphe nucleus
nTPM: 59.9
2047 Male, age 72, unknown 61.9
1828 Male, age 53, unknown 60.9
2750 Male, age 76, both hemispheres 60.4
2298 Female, age 72, unknown 59.5
2016 Female, age 72, unknown 56.9
Inferior colliculus
nTPM: 57.5
1848 Female, age 42, unknown 58.2
2849 Male, age 72, unknown 57.9
2097 Female, age 72, unknown 57.1
1890 Male, age 53, unknown 56.7
Median raphe nucleus
nTPM: 58.2
2220 Male, age 76, midline 58.2
Pedunculopontine tegmental nucleus
nTPM: 59.1
2338 Male, age 61, both hemispheres 63.7
2334 Male, age 80, both hemispheres 59.3
1921 Female, age 85, both hemispheres 54.3
Periaquaductal grey, anterior
nTPM: 58.5
2502 Female, age 75, unknown 59.7
1947 Male, age 18, unknown 59.2
1795 Male, age 51, unknown 56.6
Periaquaductal grey, dorsal
nTPM: 55.6
1840 Male, age 53, unknown 58.7
2464 Female, age 72, unknown 56.9
1831 Male, age 72, unknown 55.2
2850 Male, age 76, both hemispheres 51.8
Periaquaductal grey, lateral
nTPM: 53.8
2053 Male, age 18, unknown 57.1
2140 Male, age 76, both hemispheres 52.4
2272 Male, age 74, both hemispheres 52.1
Pretectal area
nTPM: 59.2
2407 Male, age 75, both hemispheres 68.4
1816 Male, age 51, unknown 61.8
1817 Female, age 42, unknown 60.9
1944 Female, age 72, unknown 60.9
2007 Male, age 72, unknown 60.6
2825 Male, age 18, unknown 58.7
1815 Male, age 53, unknown 58.2
2667 Female, age 75, unknown 57.8
2224 Female, age 72, unknown 57.3
2316 Male, age 76, right hemisphere 55.0
2273 Male, age 74, both hemispheres 52.1
Red nucleus
nTPM: 60.2
2584 Male, age 75, left hemisphere 76.4
2769 Male, age 72, unknown 60.2
2227 Male, age 72, unknown 60.0
1821 Female, age 72, unknown 59.9
2785 Male, age 18, unknown 59.8
1954 Female, age 42, unknown 59.7
1865 Male, age 51, unknown 58.9
1904 Male, age 53, unknown 58.9
2588 Male, age 74, left hemisphere 58.8
2725 Female, age 75, unknown 58.2
2503 Female, age 72, unknown 57.2
2823 Male, age 76, right hemisphere 54.7
Substantia nigra
nTPM: 64.8
2583 Male, age 75, right hemisphere 75.5
1916 Female, age 42, unknown 67.8
2590 Female, age 75, unknown 66.0
1851 Male, age 51, unknown 65.8
2665 Male, age 74, both hemispheres 65.8
2241 Male, age 72, unknown 64.4
1941 Male, age 53, unknown 64.1
2699 Male, age 18, unknown 59.9
1889 Female, age 72, unknown 59.4
2409 Female, age 72, unknown 59.0
Superior colliculus
nTPM: 59.9
2664 Male, age 75, both hemispheres 71.5
2087 Female, age 72, unknown 60.6
2261 Male, age 18, unknown 60.6
1839 Male, age 51, unknown 60.3
2668 Female, age 75, unknown 60.2
1796 Male, age 53, unknown 59.7
2587 Male, age 74, left hemisphere 57.8
1995 Male, age 72, unknown 57.2
1913 Female, age 42, unknown 56.6
1895 Male, age 76, right hemisphere 54.5
Ventral tegmental area
nTPM: 61.5
2223 Female, age 72, unknown 65.7
1915 Female, age 42, unknown 62.8
1942 Male, age 51, unknown 61.6
2021 Male, age 53, unknown 61.4
2218 Male, age 76, both hemispheres 58.9
2410 Female, age 72, unknown 58.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.2
Samples: 139

Max nTPM: 93.3
Min nTPM: 42.5
Std nTPM: 9.0
Median nTPM: 58.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 93.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 83.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 82.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 82.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 81.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 81.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 78.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 76.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 75.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 134.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 134.7
FF:10158-103A5 76 years, female 134.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Midbrain
nTPM: 56.6
Samples: 4

Max nTPM: 66.2
Min nTPM: 49.1
Sample A Female 66.2
Sample B Female 49.1
Sample C Male 57.0
Sample D Male 53.9
Periaqueductal gray
nTPM: 49.3
Samples: 3

Max nTPM: 56.1
Min nTPM: 43.9
Sample B Female 47.8
Sample C Male 56.1
Sample D Male 43.9
Substantia nigra
nTPM: 51.4
Samples: 4

Max nTPM: 61.5
Min nTPM: 40.8
Sample A Female 61.5
Sample B Female 46.1
Sample C Male 57.2
Sample D Male 40.8
Superior colliculi
nTPM: 54.6
Samples: 4

Max nTPM: 62.7
Min nTPM: 42.6
Sample A Female 62.7
Sample B Female 42.6
Sample C Male 59.7
Sample D Male 53.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.6
Samples: 4

Max nTPM: 107.6
Min nTPM: 88.4
Sample A Male 105.2
Sample B Male 107.6
Sample C Female 88.4
Sample D Female 97.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69734584 Antisense, RP_050503_01_C02, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.