BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:68.0 nTPM
HPA:68.0 nTPM
GTEx:44.2 nTPM
FANTOM5:117.8 Scaled Tags Per Million
Pig:37.5 nTPM
Mouse:60.6 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA041035
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 68.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.9
2288 Male, age 75, left hemisphere 55.4
2289 Male, age 61, right hemisphere 39.7
2846 Female, age 79, unknown 35.0
1781 Male, age 74, unknown 34.8
2290 Female, age 72, unknown 33.5
1857 Female, age 85, left hemisphere 28.8
2481 Female, age 94, left hemisphere 27.2
1854 Male, age 80, left hemisphere 24.8
Claustrum
nTPM: 55.6
2292 Female, age 85, both hemispheres 76.4
1956 Male, age 74, unknown 59.4
2284 Female, age 91, both hemispheres 57.3
2491 Male, age 75, both hemispheres 55.7
2568 Male, age 61, both hemispheres 55.3
2198 Male, age 80, both hemispheres 53.5
2196 Female, age 79, unknown 52.4
2645 Female, age 72, unknown 50.8
2392 Female, age 94, both hemispheres 40.0
Globus pallidus, externus
nTPM: 63.9
2772 Female, age 79, unknown 71.4
2395 Male, age 75, both hemispheres 63.4
2646 Male, age 61, right hemisphere 62.9
1996 Male, age 80, right hemisphere 62.5
2567 Female, age 72, unknown 59.2
Globus pallidus, internus
nTPM: 68.0
2111 Female, age 85, right hemisphere 102.3
2287 Male, age 75, right hemisphere 96.8
2778 Female, age 91, both hemispheres 79.5
2566 Female, age 72, unknown 63.8
1818 Male, age 74, unknown 55.5
2037 Male, age 80, right hemisphere 49.9
2483 Female, age 94, right hemisphere 28.4
Nucleus accumbens
nTPM: 39.5
2286 Male, age 75, left hemisphere 48.4
2391 Female, age 94, left hemisphere 44.3
2824 Male, age 61, right hemisphere 43.1
2732 Male, age 80, right hemisphere 40.0
2698 Female, age 72, unknown 39.7
1783 Male, age 74, unknown 37.3
1806 Female, age 85, left hemisphere 37.1
1856 Female, age 91, right hemisphere 26.3
Nucleus basalis of Meynert
nTPM: 42.1
2569 Male, age 61, both hemispheres 53.8
2821 Male, age 75, both hemispheres 45.5
2484 Female, age 94, left hemisphere 42.1
2393 Male, age 80, right hemisphere 27.1
Nucleus of the diagonal band
nTPM: 31.9
2029 Male, age 61, right hemisphere 36.1
2195 Female, age 85, both hemispheres 35.1
1812 Female, age 91, both hemispheres 30.3
2775 Male, age 80, right hemisphere 29.3
1979 Male, age 74, unknown 28.7
Olfactory tubercle
nTPM: 29.2
2487 Female, age 94, left hemisphere 35.5
1998 Female, age 91, both hemispheres 31.4
2856 Male, age 75, right hemisphere 26.7
1846 Male, age 80, right hemisphere 23.3
Putamen
nTPM: 36.6
2647 Male, age 75, left hemisphere 50.5
1829 Male, age 74, unknown 39.2
2466 Female, age 79, unknown 37.2
2489 Female, age 72, unknown 37.2
2482 Female, age 94, left hemisphere 35.5
1937 Female, age 91, right hemisphere 33.3
1838 Male, age 80, right hemisphere 23.5
Septal nuclei
nTPM: 31.6
2394 Male, age 61, left hemisphere 40.4
1960 Male, age 74, unknown 37.4
2059 Female, age 85, both hemispheres 33.6
2629 Female, age 94, right hemisphere 30.8
2031 Female, age 72, unknown 29.8
2199 Male, age 80, right hemisphere 27.3
2009 Female, age 91, both hemispheres 22.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.2
Samples: 246

Max nTPM: 73.8
Min nTPM: 7.6
Std nTPM: 12.2
Median nTPM: 36.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 73.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 72.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 65.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 61.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 61.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 59.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 58.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 56.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 55.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 54.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 54.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.2
Samples: 246

Max nTPM: 85.1
Min nTPM: 3.9
Std nTPM: 12.8
Median nTPM: 35.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 85.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 79.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 73.3
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 73.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 68.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 62.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 60.4
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 59.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 56.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 56.2
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 55.7
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Brain - Putamen (basal ganglia)
Average nTPM: 44.2
Samples: 205

Max nTPM: 153.7
Min nTPM: 10.7
Std nTPM: 16.4
Median nTPM: 44.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 153.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 81.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 79.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 79.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 78.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 75.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 73.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 72.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 72.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 69.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 69.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.5
FF:10164-103B2 76 years, female 39.5
Globus pallidus
Scaled Tags Per Million: 106.7
FF:10175-103C4 60 years, female 131.0
FF:10161-103A8 76 years, female 82.3
Nucleus accumbens
Scaled Tags Per Million: 117.8
FF:10037-101F1 23-56 years, mixed 117.8
Putamen
Scaled Tags Per Million: 53.3
FF:10176-103C5 60 years, female 53.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.5
Pig sample Sample description nTPM
Caudate
nTPM: 23.1
Samples: 4

Max nTPM: 26.4
Min nTPM: 19.9
Sample A Female 19.9
Sample B Female 26.4
Sample C Male 24.3
Sample D Male 21.9
Putamen
nTPM: 37.5
Samples: 4

Max nTPM: 57.8
Min nTPM: 23.8
Sample A Female 57.8
Sample B Female 23.8
Sample C Male 28.9
Sample D Male 39.3
Septum
nTPM: 28.7
Samples: 4

Max nTPM: 33.0
Min nTPM: 23.2
Sample A Female 31.6
Sample B Female 23.2
Sample C Male 33.0
Sample D Male 27.1
Ventral pallidum
nTPM: 36.8
Samples: 4

Max nTPM: 62.2
Min nTPM: 20.6
Sample A Female 20.6
Sample B Female 25.3
Sample C Male 62.2
Sample D Male 38.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.6
Samples: 4

Max nTPM: 66.3
Min nTPM: 56.0
Sample A Male 59.0
Sample B Male 66.3
Sample C Female 56.0
Sample D Female 56.9
Septum
nTPM: 60.6
Samples: 4

Max nTPM: 63.0
Min nTPM: 57.6
Sample A Male 59.1
Sample B Male 62.8
Sample C Female 63.0
Sample D Female 57.6
Ventral forebrain
nTPM: 57.6
Samples: 4

Max nTPM: 64.9
Min nTPM: 49.4
Sample A Male 63.0
Sample B Male 49.4
Sample C Female 64.9
Sample D Female 53.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
69527722 Antisense, RP_050421_02_C04, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 0.9
69527722 Antisense, RP_050421_02_C04, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

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