MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:68.1 nTPM
HPA:68.1 nTPM
GTEx:58.6 nTPM
FANTOM5:152.6 Scaled Tags Per Million
Pig:54.5 nTPM
Mouse:38.2 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.7
2411 Female, age 72, unknown 65.6
2019 Male, age 18, unknown 61.6
1833 Male, age 53, unknown 58.1
2586 Male, age 75, left hemisphere 56.5
1830 Male, age 51, unknown 56.3
1870 Female, age 42, unknown 51.6
2828 Female, age 72, unknown 48.1
2219 Male, age 76, both hemispheres 45.3
2666 Male, age 74, left hemisphere 44.1
1827 Male, age 72, unknown 40.0
Dorsal raphe nucleus
nTPM: 41.9
2750 Male, age 76, both hemispheres 76.2
1828 Male, age 53, unknown 40.1
2047 Male, age 72, unknown 32.2
2016 Female, age 72, unknown 30.6
2298 Female, age 72, unknown 30.5
Inferior colliculus
nTPM: 34.1
1890 Male, age 53, unknown 36.9
2097 Female, age 72, unknown 33.8
1848 Female, age 42, unknown 33.6
2849 Male, age 72, unknown 32.2
Median raphe nucleus
nTPM: 45.8
2220 Male, age 76, midline 45.8
Pedunculopontine tegmental nucleus
nTPM: 45.5
2334 Male, age 80, both hemispheres 53.2
2338 Male, age 61, both hemispheres 42.6
1921 Female, age 85, both hemispheres 40.5
Periaquaductal grey, anterior
nTPM: 33.9
1795 Male, age 51, unknown 38.2
1947 Male, age 18, unknown 37.2
2502 Female, age 75, unknown 26.4
Periaquaductal grey, dorsal
nTPM: 25.7
2464 Female, age 72, unknown 37.0
1831 Male, age 72, unknown 31.2
1840 Male, age 53, unknown 19.5
2850 Male, age 76, both hemispheres 15.4
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 41.1
2053 Male, age 18, unknown 30.7
2140 Male, age 76, both hemispheres 17.6
Pretectal area
nTPM: 41.0
2007 Male, age 72, unknown 53.4
2407 Male, age 75, both hemispheres 51.2
1815 Male, age 53, unknown 50.9
1817 Female, age 42, unknown 46.0
2316 Male, age 76, right hemisphere 41.5
1944 Female, age 72, unknown 39.7
1816 Male, age 51, unknown 39.1
2825 Male, age 18, unknown 35.5
2273 Male, age 74, both hemispheres 34.0
2224 Female, age 72, unknown 30.3
2667 Female, age 75, unknown 30.1
Red nucleus
nTPM: 68.1
2823 Male, age 76, right hemisphere 77.5
1904 Male, age 53, unknown 74.2
2584 Male, age 75, left hemisphere 73.2
2227 Male, age 72, unknown 70.6
2785 Male, age 18, unknown 70.4
2725 Female, age 75, unknown 70.3
2769 Male, age 72, unknown 68.9
2588 Male, age 74, left hemisphere 68.5
1865 Male, age 51, unknown 65.3
2503 Female, age 72, unknown 62.3
1821 Female, age 72, unknown 58.2
1954 Female, age 42, unknown 58.1
Substantia nigra
nTPM: 43.7
2583 Male, age 75, right hemisphere 67.5
2590 Female, age 75, unknown 54.7
1851 Male, age 51, unknown 47.4
1889 Female, age 72, unknown 45.5
1916 Female, age 42, unknown 45.1
1941 Male, age 53, unknown 40.2
2409 Female, age 72, unknown 36.8
2699 Male, age 18, unknown 34.7
2665 Male, age 74, both hemispheres 32.6
2241 Male, age 72, unknown 32.4
Superior colliculus
nTPM: 46.8
2668 Female, age 75, unknown 58.6
1995 Male, age 72, unknown 56.7
1913 Female, age 42, unknown 56.0
2587 Male, age 74, left hemisphere 47.8
1796 Male, age 53, unknown 44.1
1895 Male, age 76, right hemisphere 44.0
2261 Male, age 18, unknown 43.3
1839 Male, age 51, unknown 41.8
2087 Female, age 72, unknown 41.1
2664 Male, age 75, both hemispheres 34.5
Ventral tegmental area
nTPM: 50.4
2223 Female, age 72, unknown 72.1
2410 Female, age 72, unknown 56.8
2218 Male, age 76, both hemispheres 51.5
1942 Male, age 51, unknown 42.5
1915 Female, age 42, unknown 40.0
2021 Male, age 53, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.6
Samples: 139

Max nTPM: 270.2
Min nTPM: 7.3
Std nTPM: 35.0
Median nTPM: 52.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 270.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 201.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 197.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 141.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 115.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 115.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 113.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 107.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 106.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 106.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 105.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.6
FF:10158-103A5 76 years, female 152.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.5
Pig sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 86.0
Min nTPM: 36.9
Sample A Female 86.0
Sample B Female 37.0
Sample C Male 58.0
Sample D Male 36.9
Periaqueductal gray
nTPM: 29.5
Samples: 3

Max nTPM: 33.2
Min nTPM: 27.0
Sample B Female 33.2
Sample C Male 27.0
Sample D Male 28.4
Substantia nigra
nTPM: 45.4
Samples: 4

Max nTPM: 66.6
Min nTPM: 27.0
Sample A Female 66.6
Sample B Female 27.0
Sample C Male 41.9
Sample D Male 46.0
Superior colliculi
nTPM: 42.6
Samples: 4

Max nTPM: 60.6
Min nTPM: 17.1
Sample A Female 60.6
Sample B Female 17.1
Sample C Male 46.4
Sample D Male 46.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 39.5
Min nTPM: 36.3
Sample A Male 38.2
Sample B Male 36.3
Sample C Female 39.5
Sample D Female 38.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69527722 Antisense, RP_050421_02_C04, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.