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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:160.4 nTPM
HPA:160.4 nTPM
GTEx:242.0 nTPM
FANTOM5:55.5 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:137.5 nTPM
Allen mouse:4.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 160.4
Sample id Sample description nTPM
Amygdala
nTPM: 145.9
2695 Female, age 67, right hemisphere 157.8
2517 Female, age 94, left hemisphere 155.6
1987 Female, age 91, left hemisphere 151.5
2514 Male, age 75, right hemisphere 136.1
2814 Male, age 76, right hemisphere 128.3
Basal amygdala
nTPM: 159.1
2110 Male, age 80, left hemisphere 165.2
2685 Female, age 94, left hemisphere 164.4
2609 Male, age 75, right hemisphere 163.4
2827 Female, age 67, right hemisphere 159.5
2243 Female, age 91, right hemisphere 158.6
1955 Male, age 76, both hemispheres 143.7
Central amygdala
nTPM: 156.7
2826 Female, age 94, left hemisphere 191.0
2515 Male, age 75, right hemisphere 162.7
2239 Male, age 80, left hemisphere 159.9
2701 Female, age 91, right hemisphere 141.0
1905 Male, age 76, both hemispheres 128.9
Corticomedial amygdala
nTPM: 155.9
2829 Male, age 80, left hemisphere 176.2
2242 Female, age 91, right hemisphere 163.3
2535 Female, age 67, right hemisphere 161.5
2428 Male, age 75, right hemisphere 149.4
2429 Female, age 94, left hemisphere 145.6
2240 Male, age 76, both hemispheres 139.4
Lateral amygdala
nTPM: 160.4
2534 Female, age 94, left hemisphere 184.2
2256 Male, age 80, left hemisphere 167.4
2830 Female, age 67, right hemisphere 163.8
2516 Male, age 75, right hemisphere 156.8
2255 Female, age 91, right hemisphere 148.7
1883 Male, age 76, both hemispheres 141.1
Stria terminalis, bed nucleus
nTPM: 152.6
2486 Female, age 94, both hemispheres 158.5
1974 Female, age 91, both hemispheres 151.3
2201 Male, age 74, unknown 147.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 242.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 242.0
Samples: 152

Max nTPM: 713.9
Min nTPM: 91.7
Std nTPM: 88.7
Median nTPM: 231.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 713.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 607.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 530.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 510.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 460.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 459.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 420.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 393.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 386.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 379.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 362.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 361.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 352.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 344.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 331.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 329.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 327.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 322.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 313.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 310.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 308.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 308.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 307.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 305.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 304.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 303.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 298.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 296.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 291.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 282.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 280.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 279.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 279.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 278.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 277.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 275.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 275.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 274.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 273.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 273.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 272.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 270.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 269.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 269.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 267.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 263.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 263.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 261.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 259.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 258.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 256.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 255.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 251.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 249.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 248.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 247.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 245.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 245.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 244.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 244.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 243.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 243.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 243.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 243.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 242.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 240.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 239.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 239.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 236.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 235.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 234.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 234.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 234.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 234.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 233.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 232.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 231.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 229.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 229.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 229.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 228.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 227.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 227.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 224.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 220.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 219.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 219.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 216.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 215.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 214.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 213.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 211.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 209.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 208.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 207.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 206.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 203.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 202.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 202.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 199.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 197.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 197.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 196.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 196.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 196.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 195.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 195.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 194.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 191.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 189.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 188.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 188.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 186.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 186.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 186.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 185.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 185.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 180.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 179.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 177.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 177.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 177.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 176.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 174.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 173.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 172.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 172.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 170.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 167.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 165.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 164.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 164.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 163.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 162.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 161.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 159.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 159.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 153.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 152.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 151.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 143.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 140.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 134.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 133.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 133.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 132.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 128.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 125.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 117.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 94.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 91.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 55.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.5
FF:10151-102I7 76 years, female 55.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 32.7
Pig sample Sample description nTPM
Amygdala
nTPM: 32.7
Samples: 4

Max nTPM: 45.0
Min nTPM: 23.8
Sample A Female 45.0
Sample B Female 25.7
Sample C Male 36.2
Sample D Male 23.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 137.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.5
Samples: 4

Max nTPM: 148.6
Min nTPM: 127.9
Sample A Male 135.8
Sample B Male 137.7
Sample C Female 148.6
Sample D Female 127.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.1
70612727 Antisense, RP_050725_01_C05, Mouse strain C57BL/6J (56 days, male) 6.1
75695661 Antisense, RP_060518_04_C12, Mouse strain C57BL/6J (56 days, male) 2.2

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