MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:158.7 nTPM
HPA:158.7 nTPM
GTEx:127.7 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:67.1 nTPM
Mouse:24.7 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 158.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 137.0
2586 Male, age 75, left hemisphere 161.7
2828 Female, age 72, unknown 143.8
1870 Female, age 42, unknown 143.5
2666 Male, age 74, left hemisphere 143.4
1827 Male, age 72, unknown 136.8
2411 Female, age 72, unknown 132.2
1833 Male, age 53, unknown 131.8
1830 Male, age 51, unknown 128.9
2219 Male, age 76, both hemispheres 128.5
2019 Male, age 18, unknown 119.9
Dorsal raphe nucleus
nTPM: 158.7
2047 Male, age 72, unknown 185.3
1828 Male, age 53, unknown 174.1
2298 Female, age 72, unknown 151.2
2016 Female, age 72, unknown 142.5
2750 Male, age 76, both hemispheres 140.5
Inferior colliculus
nTPM: 135.2
2849 Male, age 72, unknown 139.5
1890 Male, age 53, unknown 134.5
1848 Female, age 42, unknown 134.3
2097 Female, age 72, unknown 132.6
Median raphe nucleus
nTPM: 150.2
2220 Male, age 76, midline 150.2
Pedunculopontine tegmental nucleus
nTPM: 133.7
2334 Male, age 80, both hemispheres 140.6
1921 Female, age 85, both hemispheres 133.7
2338 Male, age 61, both hemispheres 126.8
Periaquaductal grey, anterior
nTPM: 151.6
1795 Male, age 51, unknown 160.1
1947 Male, age 18, unknown 149.8
2502 Female, age 75, unknown 144.8
Periaquaductal grey, dorsal
nTPM: 143.8
1840 Male, age 53, unknown 154.6
2850 Male, age 76, both hemispheres 144.8
1831 Male, age 72, unknown 141.2
2464 Female, age 72, unknown 134.6
Periaquaductal grey, lateral
nTPM: 141.1
2140 Male, age 76, both hemispheres 144.3
2272 Male, age 74, both hemispheres 142.2
2053 Male, age 18, unknown 136.8
Pretectal area
nTPM: 139.0
2825 Male, age 18, unknown 149.3
2273 Male, age 74, both hemispheres 147.0
1816 Male, age 51, unknown 146.3
1944 Female, age 72, unknown 145.7
2224 Female, age 72, unknown 144.0
2667 Female, age 75, unknown 139.3
1815 Male, age 53, unknown 133.2
2407 Male, age 75, both hemispheres 132.4
2316 Male, age 76, right hemisphere 132.0
2007 Male, age 72, unknown 130.5
1817 Female, age 42, unknown 129.8
Red nucleus
nTPM: 128.4
2725 Female, age 75, unknown 139.6
2584 Male, age 75, left hemisphere 135.7
2588 Male, age 74, left hemisphere 133.1
2227 Male, age 72, unknown 131.6
2503 Female, age 72, unknown 131.2
2769 Male, age 72, unknown 131.0
2785 Male, age 18, unknown 129.8
1904 Male, age 53, unknown 124.3
1954 Female, age 42, unknown 123.5
1821 Female, age 72, unknown 123.1
1865 Male, age 51, unknown 118.9
2823 Male, age 76, right hemisphere 118.5
Substantia nigra
nTPM: 132.3
2665 Male, age 74, both hemispheres 143.8
1851 Male, age 51, unknown 141.9
2699 Male, age 18, unknown 140.0
2583 Male, age 75, right hemisphere 139.3
1916 Female, age 42, unknown 138.6
1889 Female, age 72, unknown 129.4
2590 Female, age 75, unknown 128.1
2241 Male, age 72, unknown 123.2
2409 Female, age 72, unknown 122.3
1941 Male, age 53, unknown 116.6
Superior colliculus
nTPM: 140.3
2664 Male, age 75, both hemispheres 161.6
1796 Male, age 53, unknown 148.6
2087 Female, age 72, unknown 145.7
2261 Male, age 18, unknown 144.1
2587 Male, age 74, left hemisphere 141.2
1839 Male, age 51, unknown 139.6
2668 Female, age 75, unknown 134.7
1913 Female, age 42, unknown 133.3
1995 Male, age 72, unknown 130.0
1895 Male, age 76, right hemisphere 124.8
Ventral tegmental area
nTPM: 145.3
2223 Female, age 72, unknown 158.7
2021 Male, age 53, unknown 154.6
1915 Female, age 42, unknown 152.1
1942 Male, age 51, unknown 140.0
2218 Male, age 76, both hemispheres 134.6
2410 Female, age 72, unknown 132.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 127.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.7
Samples: 139

Max nTPM: 282.3
Min nTPM: 23.7
Std nTPM: 46.2
Median nTPM: 118.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 282.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 278.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 269.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 259.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 251.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 242.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 235.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 228.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 203.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 199.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 191.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.1
Pig sample Sample description nTPM
Midbrain
nTPM: 53.4
Samples: 4

Max nTPM: 74.0
Min nTPM: 35.6
Sample A Female 74.0
Sample B Female 40.0
Sample C Male 64.0
Sample D Male 35.6
Periaqueductal gray
nTPM: 33.1
Samples: 3

Max nTPM: 45.1
Min nTPM: 25.4
Sample B Female 25.4
Sample C Male 45.1
Sample D Male 28.9
Substantia nigra
nTPM: 67.1
Samples: 4

Max nTPM: 83.6
Min nTPM: 40.7
Sample A Female 83.6
Sample B Female 77.3
Sample C Male 66.9
Sample D Male 40.7
Superior colliculi
nTPM: 59.7
Samples: 4

Max nTPM: 80.9
Min nTPM: 44.0
Sample A Female 59.4
Sample B Female 80.9
Sample C Male 54.5
Sample D Male 44.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 29.4
Min nTPM: 19.7
Sample A Male 29.4
Sample B Male 23.1
Sample C Female 19.7
Sample D Female 26.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70612727 Antisense, RP_050725_01_C05, Mouse strain C57BL/6J (56 days, male) 1.3
75695661 Antisense, RP_060518_04_C12, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.