MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:286.3 nTPM
HPA:286.3 nTPM
GTEx:316.3 nTPM
FANTOM5:367.9 Scaled Tags Per Million
Pig:200.6 nTPM
Mouse:94.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 286.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 252.8
1833 Male, age 53, unknown 289.8
1830 Male, age 51, unknown 286.1
2666 Male, age 74, left hemisphere 285.5
2411 Female, age 72, unknown 275.6
1870 Female, age 42, unknown 258.9
2019 Male, age 18, unknown 250.7
2586 Male, age 75, left hemisphere 234.5
2828 Female, age 72, unknown 220.7
2219 Male, age 76, both hemispheres 216.8
1827 Male, age 72, unknown 209.2
Dorsal raphe nucleus
nTPM: 206.3
2750 Male, age 76, both hemispheres 247.6
2016 Female, age 72, unknown 225.2
1828 Male, age 53, unknown 210.9
2298 Female, age 72, unknown 174.1
2047 Male, age 72, unknown 173.5
Inferior colliculus
nTPM: 212.4
2849 Male, age 72, unknown 223.8
1848 Female, age 42, unknown 212.1
1890 Male, age 53, unknown 208.1
2097 Female, age 72, unknown 205.8
Median raphe nucleus
nTPM: 192.4
2220 Male, age 76, midline 192.4
Pedunculopontine tegmental nucleus
nTPM: 240.0
2334 Male, age 80, both hemispheres 259.2
2338 Male, age 61, both hemispheres 251.6
1921 Female, age 85, both hemispheres 209.3
Periaquaductal grey, anterior
nTPM: 206.5
2502 Female, age 75, unknown 241.1
1947 Male, age 18, unknown 208.2
1795 Male, age 51, unknown 170.1
Periaquaductal grey, dorsal
nTPM: 199.1
2464 Female, age 72, unknown 237.6
1831 Male, age 72, unknown 198.1
1840 Male, age 53, unknown 182.4
2850 Male, age 76, both hemispheres 178.3
Periaquaductal grey, lateral
nTPM: 183.9
2053 Male, age 18, unknown 206.6
2272 Male, age 74, both hemispheres 176.3
2140 Male, age 76, both hemispheres 168.9
Pretectal area
nTPM: 199.3
1815 Male, age 53, unknown 242.6
2316 Male, age 76, right hemisphere 227.1
1817 Female, age 42, unknown 216.0
2007 Male, age 72, unknown 210.8
2825 Male, age 18, unknown 207.6
2407 Male, age 75, both hemispheres 197.9
2224 Female, age 72, unknown 194.8
1944 Female, age 72, unknown 182.8
1816 Male, age 51, unknown 179.5
2667 Female, age 75, unknown 171.0
2273 Male, age 74, both hemispheres 162.1
Red nucleus
nTPM: 286.3
2503 Female, age 72, unknown 332.9
1904 Male, age 53, unknown 305.8
1821 Female, age 72, unknown 301.0
2588 Male, age 74, left hemisphere 297.9
1865 Male, age 51, unknown 297.7
1954 Female, age 42, unknown 285.7
2227 Male, age 72, unknown 280.2
2769 Male, age 72, unknown 276.0
2823 Male, age 76, right hemisphere 271.1
2785 Male, age 18, unknown 266.0
2725 Female, age 75, unknown 263.7
2584 Male, age 75, left hemisphere 257.8
Substantia nigra
nTPM: 232.5
2409 Female, age 72, unknown 284.0
2241 Male, age 72, unknown 251.6
1851 Male, age 51, unknown 244.4
2699 Male, age 18, unknown 237.0
2665 Male, age 74, both hemispheres 236.1
2590 Female, age 75, unknown 233.3
2583 Male, age 75, right hemisphere 221.5
1889 Female, age 72, unknown 212.6
1916 Female, age 42, unknown 204.1
1941 Male, age 53, unknown 200.5
Superior colliculus
nTPM: 228.3
1995 Male, age 72, unknown 272.7
1913 Female, age 42, unknown 272.2
2587 Male, age 74, left hemisphere 260.3
1839 Male, age 51, unknown 248.8
2668 Female, age 75, unknown 236.2
1895 Male, age 76, right hemisphere 221.7
2664 Male, age 75, both hemispheres 196.8
1796 Male, age 53, unknown 195.2
2087 Female, age 72, unknown 189.6
2261 Male, age 18, unknown 189.3
Ventral tegmental area
nTPM: 228.3
2410 Female, age 72, unknown 254.7
2223 Female, age 72, unknown 246.8
1942 Male, age 51, unknown 224.5
1915 Female, age 42, unknown 223.0
2021 Male, age 53, unknown 216.0
2218 Male, age 76, both hemispheres 204.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 316.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 316.3
Samples: 139

Max nTPM: 895.5
Min nTPM: 114.4
Std nTPM: 150.5
Median nTPM: 283.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 895.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 814.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 813.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 730.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 639.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 633.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 626.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 614.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 589.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 581.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 572.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 367.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 367.9
FF:10158-103A5 76 years, female 367.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 200.6
Pig sample Sample description nTPM
Midbrain
nTPM: 200.6
Samples: 4

Max nTPM: 322.0
Min nTPM: 138.4
Sample A Female 322.0
Sample B Female 197.7
Sample C Male 144.2
Sample D Male 138.4
Periaqueductal gray
nTPM: 155.3
Samples: 3

Max nTPM: 160.8
Min nTPM: 152.0
Sample B Female 160.8
Sample C Male 152.0
Sample D Male 153.1
Substantia nigra
nTPM: 190.8
Samples: 4

Max nTPM: 265.6
Min nTPM: 161.5
Sample A Female 265.6
Sample B Female 166.0
Sample C Male 170.0
Sample D Male 161.5
Superior colliculi
nTPM: 181.5
Samples: 4

Max nTPM: 273.4
Min nTPM: 122.1
Sample A Female 273.4
Sample B Female 122.1
Sample C Male 159.0
Sample D Male 171.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 94.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.6
Samples: 4

Max nTPM: 98.1
Min nTPM: 90.7
Sample A Male 92.2
Sample B Male 97.4
Sample C Female 98.1
Sample D Female 90.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71280538 Antisense, RP_050818_01_A11, Mouse strain C57BL/6J (56 days, male) 0.8
77799059 Antisense, RP_070212_03_E04, Mouse strain C57BL/6J (56 days, male) 0.6
70813353 Antisense, RP_050712_03_G08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.