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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:264.3 nTPM
HPA:264.3 nTPM
GTEx:318.6 nTPM
FANTOM5:245.1 Scaled Tags Per Million
Pig:213.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 264.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 211.5
2048 Male, age 55, midline 240.6
1981 Female, age 72, midline 210.0
2194 Female, age 79, both hemispheres 209.5
2565 Male, age 75, midline 204.4
2816 Male, age 47, midline 192.9
Cervical spinal cord, dorsal horn
nTPM: 211.2
2173 Female, age 72, unknown 246.0
2296 Male, age 66, both hemispheres 213.0
2069 Male, age 47, both hemispheres 211.6
1877 Male, age 55, unknown 210.1
2297 Male, age 75, both hemispheres 209.1
2721 Male, age 90, both hemispheres 177.3
Cervical spinal cord, ventral horn
nTPM: 264.3
2480 Male, age 75, both hemispheres 357.1
2295 Male, age 66, both hemispheres 292.2
2809 Male, age 90, both hemispheres 280.1
2068 Male, age 55, unknown 233.6
2820 Female, age 79, both hemispheres 216.6
2098 Female, age 72, unknown 206.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 318.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 318.6
Samples: 159

Max nTPM: 1027.4
Min nTPM: 131.1
Std nTPM: 132.8
Median nTPM: 292.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1027.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 749.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 734.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 685.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 626.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 622.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 593.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 590.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 565.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 562.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 536.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 531.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 520.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 513.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 507.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 491.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 490.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 478.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 475.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 472.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 463.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 427.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 423.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 419.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 416.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 414.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 409.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 404.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 398.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 397.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 396.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 396.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 394.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 385.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 382.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 378.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 376.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 375.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 374.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 372.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 369.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 361.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 361.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 357.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 355.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 354.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 353.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 349.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 348.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 346.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 346.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 345.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 345.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 345.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 340.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 339.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 336.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 335.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 335.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 334.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 329.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 326.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 326.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 323.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 322.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 321.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 318.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 315.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 315.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 315.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 312.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 305.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 304.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 302.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 301.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 301.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 298.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 293.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 292.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 292.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 290.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 290.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 289.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 289.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 288.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 281.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 280.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 279.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 277.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 274.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 273.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 273.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 273.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 271.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 270.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 268.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 268.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 267.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 266.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 264.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 260.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 258.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 249.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 246.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 245.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 245.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 244.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 242.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 242.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 240.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 238.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 233.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 233.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 232.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 232.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 229.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 227.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 227.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 227.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 226.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 225.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 224.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 218.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 217.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 217.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 216.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 216.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 215.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 213.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 211.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 209.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 208.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 206.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 205.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 204.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 203.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 201.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 201.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 196.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 192.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 187.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 187.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 185.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 183.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 180.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 179.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 177.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 172.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 166.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 165.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 161.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 160.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 158.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 157.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 157.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 156.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 146.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 141.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 131.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 245.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 245.1
FF:10181-103D1 60 years, female 252.3
FF:10159-103A6 76 years, female 237.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 199.6
Samples: 4

Max nTPM: 240.6
Min nTPM: 172.1
Sample A Female 213.2
Sample B Female 240.6
Sample C Male 172.5
Sample D Male 172.1
Ventral spinal cord
nTPM: 213.6
Samples: 4

Max nTPM: 257.7
Min nTPM: 171.1
Sample A Female 257.7
Sample B Female 206.6
Sample C Male 171.1
Sample D Male 219.0

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