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PTP4A2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:269.3 nTPM
HPA:269.3 nTPM
GTEx:227.8 nTPM
FANTOM5:190.7 Scaled Tags Per Million
Pig:123.6 nTPM
Mouse:82.3 nTPM
Allen mouse:1.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 269.3
Sample id Sample description nTPM
Amygdala
nTPM: 230.8
2695 Female, age 67, right hemisphere 300.1
2814 Male, age 76, right hemisphere 234.0
2514 Male, age 75, right hemisphere 222.0
2517 Female, age 94, left hemisphere 213.3
1987 Female, age 91, left hemisphere 184.7
Basal amygdala
nTPM: 225.7
2827 Female, age 67, right hemisphere 343.9
2685 Female, age 94, left hemisphere 225.5
2609 Male, age 75, right hemisphere 209.7
2110 Male, age 80, left hemisphere 208.6
1955 Male, age 76, both hemispheres 195.9
2243 Female, age 91, right hemisphere 170.5
Central amygdala
nTPM: 239.2
2826 Female, age 94, left hemisphere 374.8
2515 Male, age 75, right hemisphere 223.7
2239 Male, age 80, left hemisphere 207.5
1905 Male, age 76, both hemispheres 197.8
2701 Female, age 91, right hemisphere 192.1
Corticomedial amygdala
nTPM: 198.4
2535 Female, age 67, right hemisphere 232.6
2428 Male, age 75, right hemisphere 206.2
2240 Male, age 76, both hemispheres 205.1
2429 Female, age 94, left hemisphere 192.8
2829 Male, age 80, left hemisphere 190.7
2242 Female, age 91, right hemisphere 163.1
Lateral amygdala
nTPM: 269.3
2830 Female, age 67, right hemisphere 432.3
2516 Male, age 75, right hemisphere 297.7
2534 Female, age 94, left hemisphere 266.7
2256 Male, age 80, left hemisphere 239.2
2255 Female, age 91, right hemisphere 191.9
1883 Male, age 76, both hemispheres 187.7
Stria terminalis, bed nucleus
nTPM: 176.3
1974 Female, age 91, both hemispheres 192.4
2201 Male, age 74, unknown 179.9
2486 Female, age 94, both hemispheres 156.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 227.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 227.8
Samples: 152

Max nTPM: 683.7
Min nTPM: 79.9
Std nTPM: 124.2
Median nTPM: 180.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 683.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 580.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 547.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 540.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 537.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 516.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 496.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 494.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 485.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 481.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 467.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 463.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 459.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 444.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 420.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 420.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 418.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 408.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 387.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 385.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 383.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 366.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 350.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 347.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 343.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 340.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 340.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 338.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 333.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 331.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 307.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 306.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 305.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 305.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 305.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 304.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 300.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 298.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 298.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 291.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 290.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 286.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 286.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 284.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 277.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 276.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 266.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 262.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 254.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 254.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 245.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 245.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 243.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 238.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 238.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 231.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 230.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 227.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 224.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 222.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 222.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 220.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 220.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 220.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 216.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 205.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 205.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 202.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 201.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 201.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 197.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 195.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 190.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 186.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 184.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 180.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 179.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 177.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 176.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 176.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 174.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 168.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 167.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 165.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 161.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 160.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 158.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 157.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 156.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 153.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 152.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 152.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 151.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 150.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 150.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 149.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 149.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 149.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 148.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 146.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 146.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 145.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 144.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 144.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 143.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 141.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 141.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 140.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 140.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 136.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 136.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 135.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 135.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 133.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 133.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 133.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 129.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 129.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 129.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 128.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 125.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 124.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 124.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 124.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 123.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 122.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 122.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 120.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 119.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 117.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 117.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 117.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 116.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 115.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 114.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 113.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 113.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 113.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 112.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 111.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 108.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 108.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 107.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 107.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 106.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 101.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 98.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 97.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 95.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 79.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 190.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 190.7
FF:10151-102I7 76 years, female 190.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.6
Pig sample Sample description nTPM
Amygdala
nTPM: 123.6
Samples: 4

Max nTPM: 155.2
Min nTPM: 103.5
Sample A Female 155.2
Sample B Female 129.4
Sample C Male 106.4
Sample D Male 103.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 82.3
Samples: 4

Max nTPM: 86.1
Min nTPM: 80.2
Sample A Male 80.2
Sample B Male 81.8
Sample C Female 86.1
Sample D Female 81.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.2
71280538 Antisense, RP_050818_01_A11, Mouse strain C57BL/6J (56 days, male) 2.3
77799059 Antisense, RP_070212_03_E04, Mouse strain C57BL/6J (56 days, male) 1.1
70813353 Antisense, RP_050712_03_G08, Mouse strain C57BL/6J (56 days, male) 0.2

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