MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:119.0 nTPM
HPA:119.0 nTPM
GTEx:149.4 nTPM
FANTOM5:21.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 119.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.3
2219 Male, age 76, both hemispheres 109.1
1827 Male, age 72, unknown 106.3
2666 Male, age 74, left hemisphere 103.1
2586 Male, age 75, left hemisphere 102.2
1870 Female, age 42, unknown 101.9
1833 Male, age 53, unknown 100.2
2411 Female, age 72, unknown 98.9
2828 Female, age 72, unknown 98.5
1830 Male, age 51, unknown 98.2
2019 Male, age 18, unknown 94.6
Dorsal raphe nucleus
nTPM: 98.6
1828 Male, age 53, unknown 102.3
2047 Male, age 72, unknown 100.4
2750 Male, age 76, both hemispheres 99.5
2298 Female, age 72, unknown 97.3
2016 Female, age 72, unknown 93.6
Inferior colliculus
nTPM: 107.2
2849 Male, age 72, unknown 123.0
1848 Female, age 42, unknown 104.5
1890 Male, age 53, unknown 101.8
2097 Female, age 72, unknown 99.4
Median raphe nucleus
nTPM: 119.0
2220 Male, age 76, midline 119.0
Pedunculopontine tegmental nucleus
nTPM: 109.1
2334 Male, age 80, both hemispheres 112.3
2338 Male, age 61, both hemispheres 108.8
1921 Female, age 85, both hemispheres 106.3
Periaquaductal grey, anterior
nTPM: 103.1
2502 Female, age 75, unknown 103.9
1947 Male, age 18, unknown 103.6
1795 Male, age 51, unknown 101.7
Periaquaductal grey, dorsal
nTPM: 108.0
2850 Male, age 76, both hemispheres 120.2
1840 Male, age 53, unknown 107.0
2464 Female, age 72, unknown 103.8
1831 Male, age 72, unknown 101.0
Periaquaductal grey, lateral
nTPM: 100.1
2140 Male, age 76, both hemispheres 108.5
2053 Male, age 18, unknown 98.7
2272 Male, age 74, both hemispheres 93.2
Pretectal area
nTPM: 103.6
1816 Male, age 51, unknown 108.4
2407 Male, age 75, both hemispheres 107.4
1944 Female, age 72, unknown 107.1
1817 Female, age 42, unknown 106.7
2825 Male, age 18, unknown 105.8
2224 Female, age 72, unknown 104.9
2007 Male, age 72, unknown 104.5
1815 Male, age 53, unknown 103.2
2667 Female, age 75, unknown 100.5
2316 Male, age 76, right hemisphere 95.6
2273 Male, age 74, both hemispheres 95.1
Red nucleus
nTPM: 95.7
2725 Female, age 75, unknown 103.2
2584 Male, age 75, left hemisphere 97.4
2503 Female, age 72, unknown 96.3
1954 Female, age 42, unknown 95.9
1865 Male, age 51, unknown 95.1
2785 Male, age 18, unknown 95.1
2769 Male, age 72, unknown 95.0
2227 Male, age 72, unknown 94.6
2823 Male, age 76, right hemisphere 94.6
2588 Male, age 74, left hemisphere 94.3
1821 Female, age 72, unknown 94.1
1904 Male, age 53, unknown 92.9
Substantia nigra
nTPM: 100.7
2699 Male, age 18, unknown 106.7
1941 Male, age 53, unknown 105.9
1889 Female, age 72, unknown 104.1
1916 Female, age 42, unknown 103.3
2665 Male, age 74, both hemispheres 103.1
2590 Female, age 75, unknown 99.1
1851 Male, age 51, unknown 99.0
2241 Male, age 72, unknown 97.0
2409 Female, age 72, unknown 96.3
2583 Male, age 75, right hemisphere 92.0
Superior colliculus
nTPM: 99.5
1895 Male, age 76, right hemisphere 104.5
2664 Male, age 75, both hemispheres 102.8
1796 Male, age 53, unknown 102.3
2087 Female, age 72, unknown 102.1
1839 Male, age 51, unknown 101.4
2587 Male, age 74, left hemisphere 100.0
2261 Male, age 18, unknown 99.2
1913 Female, age 42, unknown 95.1
2668 Female, age 75, unknown 94.8
1995 Male, age 72, unknown 92.5
Ventral tegmental area
nTPM: 100.5
2218 Male, age 76, both hemispheres 109.4
1915 Female, age 42, unknown 101.9
2223 Female, age 72, unknown 100.0
1942 Male, age 51, unknown 99.5
2021 Male, age 53, unknown 96.7
2410 Female, age 72, unknown 95.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 149.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 149.4
Samples: 139

Max nTPM: 359.3
Min nTPM: 40.5
Std nTPM: 44.8
Median nTPM: 145.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 359.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 237.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 235.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 227.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 224.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 223.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 220.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 219.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 218.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 216.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 214.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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