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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:90.3 nTPM
HPA:90.3 nTPM
GTEx:170.8 nTPM
FANTOM5:189.3 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 90.3
Sample id Sample description nTPM
Amygdala
nTPM: 90.3
2695 Female, age 67, right hemisphere 98.9
1987 Female, age 91, left hemisphere 92.7
2517 Female, age 94, left hemisphere 87.8
2514 Male, age 75, right hemisphere 87.5
2814 Male, age 76, right hemisphere 84.7
Basal amygdala
nTPM: 87.4
2827 Female, age 67, right hemisphere 90.3
2110 Male, age 80, left hemisphere 89.5
1955 Male, age 76, both hemispheres 87.8
2609 Male, age 75, right hemisphere 87.6
2685 Female, age 94, left hemisphere 84.9
2243 Female, age 91, right hemisphere 84.5
Central amygdala
nTPM: 88.2
2826 Female, age 94, left hemisphere 91.8
2515 Male, age 75, right hemisphere 91.3
2239 Male, age 80, left hemisphere 87.0
1905 Male, age 76, both hemispheres 85.5
2701 Female, age 91, right hemisphere 85.3
Corticomedial amygdala
nTPM: 86.2
2242 Female, age 91, right hemisphere 87.6
2829 Male, age 80, left hemisphere 86.8
2535 Female, age 67, right hemisphere 86.6
2428 Male, age 75, right hemisphere 86.1
2240 Male, age 76, both hemispheres 85.9
2429 Female, age 94, left hemisphere 83.9
Lateral amygdala
nTPM: 89.2
2830 Female, age 67, right hemisphere 94.9
2534 Female, age 94, left hemisphere 89.5
2256 Male, age 80, left hemisphere 89.2
2516 Male, age 75, right hemisphere 88.1
2255 Female, age 91, right hemisphere 87.2
1883 Male, age 76, both hemispheres 86.6
Stria terminalis, bed nucleus
nTPM: 83.4
2201 Male, age 74, unknown 85.8
1974 Female, age 91, both hemispheres 83.6
2486 Female, age 94, both hemispheres 80.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 170.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 170.8
Samples: 152

Max nTPM: 1708.3
Min nTPM: 24.2
Std nTPM: 184.6
Median nTPM: 103.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1708.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 936.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 572.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 540.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 539.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 532.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 496.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 453.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 452.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 432.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 409.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 404.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 366.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 361.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 355.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 336.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 333.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 320.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 320.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 314.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 298.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 294.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 288.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 286.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 286.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 279.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 260.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 260.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 259.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 240.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 238.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 232.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 229.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 226.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 225.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 222.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 222.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 217.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 215.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 212.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 209.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 200.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 197.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 195.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 194.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 190.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 176.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 176.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 169.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 168.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 164.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 161.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 161.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 159.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 158.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 156.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 156.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 151.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 150.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 147.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 144.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 139.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 135.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 131.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 129.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 128.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 125.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 124.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 117.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 113.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 110.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 106.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 105.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 103.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 101.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 98.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 98.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 97.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 95.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 95.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 94.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 93.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 92.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 92.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 90.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 89.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 89.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 89.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 88.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 87.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 87.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 86.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 85.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 83.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 81.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 81.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 80.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 80.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 78.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 76.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 75.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 74.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 74.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 73.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 73.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 73.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 72.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 72.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 71.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 70.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 66.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 66.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 65.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 65.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 64.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 63.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 63.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 62.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 62.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 62.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 61.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 61.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 57.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 56.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 52.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 51.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 50.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 49.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 47.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 47.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 45.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 45.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 42.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 41.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 41.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 35.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 33.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 33.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 33.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 27.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 25.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 24.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 189.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 189.3
FF:10151-102I7 76 years, female 189.3

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