MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:89.4 nTPM
HPA:89.4 nTPM
GTEx:191.5 nTPM
FANTOM5:392.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.9
2828 Female, age 72, unknown 88.9
1870 Female, age 42, unknown 86.4
2666 Male, age 74, left hemisphere 86.3
1830 Male, age 51, unknown 85.4
1833 Male, age 53, unknown 85.2
1827 Male, age 72, unknown 84.7
2019 Male, age 18, unknown 84.2
2411 Female, age 72, unknown 83.9
2219 Male, age 76, both hemispheres 82.1
2586 Male, age 75, left hemisphere 81.5
Dorsal raphe nucleus
nTPM: 86.8
1828 Male, age 53, unknown 88.3
2016 Female, age 72, unknown 87.1
2298 Female, age 72, unknown 87.1
2750 Male, age 76, both hemispheres 86.2
2047 Male, age 72, unknown 85.5
Inferior colliculus
nTPM: 86.1
2097 Female, age 72, unknown 88.9
1890 Male, age 53, unknown 86.2
1848 Female, age 42, unknown 85.3
2849 Male, age 72, unknown 84.1
Median raphe nucleus
nTPM: 87.1
2220 Male, age 76, midline 87.1
Pedunculopontine tegmental nucleus
nTPM: 89.4
2338 Male, age 61, both hemispheres 96.3
2334 Male, age 80, both hemispheres 88.8
1921 Female, age 85, both hemispheres 83.1
Periaquaductal grey, anterior
nTPM: 86.4
2502 Female, age 75, unknown 88.5
1795 Male, age 51, unknown 86.3
1947 Male, age 18, unknown 84.4
Periaquaductal grey, dorsal
nTPM: 87.4
2850 Male, age 76, both hemispheres 93.3
1831 Male, age 72, unknown 86.5
2464 Female, age 72, unknown 86.1
1840 Male, age 53, unknown 83.6
Periaquaductal grey, lateral
nTPM: 88.7
2140 Male, age 76, both hemispheres 89.1
2053 Male, age 18, unknown 88.9
2272 Male, age 74, both hemispheres 88.2
Pretectal area
nTPM: 86.3
2224 Female, age 72, unknown 88.2
2316 Male, age 76, right hemisphere 88.0
2273 Male, age 74, both hemispheres 87.6
2825 Male, age 18, unknown 87.2
2667 Female, age 75, unknown 86.9
1944 Female, age 72, unknown 86.5
1817 Female, age 42, unknown 86.0
2007 Male, age 72, unknown 85.4
1816 Male, age 51, unknown 85.2
1815 Male, age 53, unknown 85.1
2407 Male, age 75, both hemispheres 82.8
Red nucleus
nTPM: 87.8
2769 Male, age 72, unknown 89.8
2227 Male, age 72, unknown 89.7
1954 Female, age 42, unknown 89.2
2503 Female, age 72, unknown 89.2
1821 Female, age 72, unknown 88.8
2725 Female, age 75, unknown 88.7
1865 Male, age 51, unknown 88.6
1904 Male, age 53, unknown 88.0
2588 Male, age 74, left hemisphere 87.2
2823 Male, age 76, right hemisphere 86.5
2785 Male, age 18, unknown 85.7
2584 Male, age 75, left hemisphere 82.3
Substantia nigra
nTPM: 86.6
2699 Male, age 18, unknown 93.4
2665 Male, age 74, both hemispheres 92.8
1851 Male, age 51, unknown 86.5
2409 Female, age 72, unknown 86.1
1916 Female, age 42, unknown 86.0
1889 Female, age 72, unknown 85.7
1941 Male, age 53, unknown 85.4
2241 Male, age 72, unknown 84.2
2590 Female, age 75, unknown 83.9
2583 Male, age 75, right hemisphere 81.6
Superior colliculus
nTPM: 86.1
1913 Female, age 42, unknown 91.2
2587 Male, age 74, left hemisphere 89.4
1995 Male, age 72, unknown 89.0
1796 Male, age 53, unknown 86.9
2087 Female, age 72, unknown 86.5
1839 Male, age 51, unknown 85.2
2668 Female, age 75, unknown 84.6
2261 Male, age 18, unknown 83.7
1895 Male, age 76, right hemisphere 82.4
2664 Male, age 75, both hemispheres 82.1
Ventral tegmental area
nTPM: 88.3
2021 Male, age 53, unknown 90.2
1915 Female, age 42, unknown 89.3
2223 Female, age 72, unknown 89.3
2218 Male, age 76, both hemispheres 88.1
1942 Male, age 51, unknown 87.2
2410 Female, age 72, unknown 85.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 191.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 191.5
Samples: 139

Max nTPM: 988.6
Min nTPM: 34.0
Std nTPM: 156.9
Median nTPM: 145.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 988.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 938.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 725.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 623.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 593.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 488.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 480.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 467.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 461.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 431.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 416.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 392.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 392.8
FF:10158-103A5 76 years, female 392.8

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The Human Protein Atlas

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