BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA:53.3 nTPM
GTEx:62.6 nTPM
FANTOM5:154.2 Scaled Tags Per Million
Mouse:49.4 nTPM
Allen mouse:1.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.3
1781 Male, age 74, unknown 30.0
2288 Male, age 75, left hemisphere 29.8
2481 Female, age 94, left hemisphere 24.2
1857 Female, age 85, left hemisphere 23.5
2290 Female, age 72, unknown 23.4
2846 Female, age 79, unknown 22.3
1854 Male, age 80, left hemisphere 21.5
2289 Male, age 61, right hemisphere 19.6
Claustrum
nTPM: 35.2
2392 Female, age 94, both hemispheres 45.1
2491 Male, age 75, both hemispheres 43.2
2284 Female, age 91, both hemispheres 38.7
2198 Male, age 80, both hemispheres 37.4
2568 Male, age 61, both hemispheres 36.9
1956 Male, age 74, unknown 34.6
2196 Female, age 79, unknown 30.5
2645 Female, age 72, unknown 26.7
2292 Female, age 85, both hemispheres 23.7
Globus pallidus, externus
nTPM: 18.8
2772 Female, age 79, unknown 27.2
2395 Male, age 75, both hemispheres 24.3
1996 Male, age 80, right hemisphere 17.1
2646 Male, age 61, right hemisphere 13.5
2567 Female, age 72, unknown 12.0
Globus pallidus, internus
nTPM: 20.0
2287 Male, age 75, right hemisphere 31.4
1818 Male, age 74, unknown 21.6
2483 Female, age 94, right hemisphere 20.2
2778 Female, age 91, both hemispheres 18.7
2566 Female, age 72, unknown 16.9
2037 Male, age 80, right hemisphere 16.8
2111 Female, age 85, right hemisphere 14.5
Nucleus accumbens
nTPM: 29.6
1856 Female, age 91, right hemisphere 43.7
2824 Male, age 61, right hemisphere 31.3
2698 Female, age 72, unknown 30.2
2286 Male, age 75, left hemisphere 28.3
1783 Male, age 74, unknown 28.1
2732 Male, age 80, right hemisphere 26.7
1806 Female, age 85, left hemisphere 24.7
2391 Female, age 94, left hemisphere 24.1
Nucleus basalis of Meynert
nTPM: 20.4
2821 Male, age 75, both hemispheres 26.5
2484 Female, age 94, left hemisphere 22.6
2393 Male, age 80, right hemisphere 21.2
2569 Male, age 61, both hemispheres 11.2
Nucleus of the diagonal band
nTPM: 50.1
1812 Female, age 91, both hemispheres 58.8
2775 Male, age 80, right hemisphere 53.4
2029 Male, age 61, right hemisphere 52.7
2195 Female, age 85, both hemispheres 44.8
1979 Male, age 74, unknown 40.9
Olfactory tubercle
nTPM: 53.3
1998 Female, age 91, both hemispheres 59.8
2487 Female, age 94, left hemisphere 57.3
1846 Male, age 80, right hemisphere 49.3
2856 Male, age 75, right hemisphere 46.7
Putamen
nTPM: 20.9
1937 Female, age 91, right hemisphere 28.2
1838 Male, age 80, right hemisphere 26.3
2482 Female, age 94, left hemisphere 22.8
2466 Female, age 79, unknown 20.5
1829 Male, age 74, unknown 18.8
2647 Male, age 75, left hemisphere 17.8
2489 Female, age 72, unknown 11.9
Septal nuclei
nTPM: 43.2
2031 Female, age 72, unknown 59.0
2629 Female, age 94, right hemisphere 53.9
2009 Female, age 91, both hemispheres 51.0
1960 Male, age 74, unknown 46.1
2394 Male, age 61, left hemisphere 32.2
2059 Female, age 85, both hemispheres 31.9
2199 Male, age 80, right hemisphere 28.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.0
Samples: 246

Max nTPM: 164.8
Min nTPM: 9.1
Std nTPM: 18.5
Median nTPM: 39.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 164.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 116.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 109.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 88.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 82.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 76.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 72.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 71.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 69.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 68.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 68.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.6
Samples: 246

Max nTPM: 181.4
Min nTPM: 11.4
Std nTPM: 27.0
Median nTPM: 64.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 181.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 144.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 122.7
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 121.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 118.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 118.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 118.1
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 117.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 115.7
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 112.0
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 109.3
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Brain - Putamen (basal ganglia)
Average nTPM: 34.7
Samples: 205

Max nTPM: 93.1
Min nTPM: 7.5
Std nTPM: 15.0
Median nTPM: 34.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 93.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 85.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 79.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 67.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 66.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 66.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 65.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 64.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 63.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 63.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 63.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.1
FF:10164-103B2 76 years, female 85.1
Globus pallidus
Scaled Tags Per Million: 61.0
FF:10175-103C4 60 years, female 82.8
FF:10161-103A8 76 years, female 39.2
Nucleus accumbens
Scaled Tags Per Million: 98.6
FF:10037-101F1 23-56 years, mixed 98.6
Putamen
Scaled Tags Per Million: 154.2
FF:10176-103C5 60 years, female 154.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 49.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.4
Samples: 4

Max nTPM: 33.8
Min nTPM: 30.0
Sample A Male 32.4
Sample B Male 30.0
Sample C Female 33.2
Sample D Female 33.8
Septum
nTPM: 49.4
Samples: 4

Max nTPM: 52.2
Min nTPM: 44.3
Sample A Male 52.2
Sample B Male 44.3
Sample C Female 50.3
Sample D Female 50.9
Ventral forebrain
nTPM: 40.7
Samples: 4

Max nTPM: 46.8
Min nTPM: 36.2
Sample A Male 39.3
Sample B Male 46.8
Sample C Female 36.2
Sample D Female 40.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
583576 Antisense, RP_040831_02_G09, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 1.6
583576 Antisense, RP_040831_02_G09, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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