MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.7 nTPM
HPA:62.7 nTPM
GTEx:45.9 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Mouse:79.7 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.4
1827 Male, age 72, unknown 47.9
2411 Female, age 72, unknown 46.4
1870 Female, age 42, unknown 39.9
2219 Male, age 76, both hemispheres 34.7
1833 Male, age 53, unknown 31.2
1830 Male, age 51, unknown 30.0
2828 Female, age 72, unknown 28.2
2666 Male, age 74, left hemisphere 24.6
2586 Male, age 75, left hemisphere 21.0
2019 Male, age 18, unknown 20.2
Dorsal raphe nucleus
nTPM: 36.7
2298 Female, age 72, unknown 54.2
2750 Male, age 76, both hemispheres 37.7
2047 Male, age 72, unknown 34.0
2016 Female, age 72, unknown 29.6
1828 Male, age 53, unknown 27.9
Inferior colliculus
nTPM: 41.6
2097 Female, age 72, unknown 51.1
1848 Female, age 42, unknown 42.9
2849 Male, age 72, unknown 41.8
1890 Male, age 53, unknown 30.6
Median raphe nucleus
nTPM: 41.1
2220 Male, age 76, midline 41.1
Pedunculopontine tegmental nucleus
nTPM: 40.5
1921 Female, age 85, both hemispheres 48.8
2334 Male, age 80, both hemispheres 44.6
2338 Male, age 61, both hemispheres 28.1
Periaquaductal grey, anterior
nTPM: 62.7
1947 Male, age 18, unknown 93.9
2502 Female, age 75, unknown 47.5
1795 Male, age 51, unknown 46.7
Periaquaductal grey, dorsal
nTPM: 39.3
1840 Male, age 53, unknown 46.6
2464 Female, age 72, unknown 40.4
2850 Male, age 76, both hemispheres 37.4
1831 Male, age 72, unknown 32.7
Periaquaductal grey, lateral
nTPM: 36.6
2272 Male, age 74, both hemispheres 37.5
2053 Male, age 18, unknown 37.4
2140 Male, age 76, both hemispheres 35.0
Pretectal area
nTPM: 37.1
2224 Female, age 72, unknown 51.3
2825 Male, age 18, unknown 45.4
1944 Female, age 72, unknown 37.8
1816 Male, age 51, unknown 37.7
2667 Female, age 75, unknown 37.3
2316 Male, age 76, right hemisphere 35.8
2273 Male, age 74, both hemispheres 34.1
2007 Male, age 72, unknown 33.9
1817 Female, age 42, unknown 33.5
1815 Male, age 53, unknown 31.8
2407 Male, age 75, both hemispheres 29.0
Red nucleus
nTPM: 26.7
1821 Female, age 72, unknown 34.7
1954 Female, age 42, unknown 32.7
2725 Female, age 75, unknown 32.7
2769 Male, age 72, unknown 27.1
2227 Male, age 72, unknown 26.6
2584 Male, age 75, left hemisphere 26.5
2823 Male, age 76, right hemisphere 25.7
2503 Female, age 72, unknown 24.9
1904 Male, age 53, unknown 24.6
1865 Male, age 51, unknown 24.2
2588 Male, age 74, left hemisphere 21.4
2785 Male, age 18, unknown 19.7
Substantia nigra
nTPM: 27.3
1889 Female, age 72, unknown 35.1
2241 Male, age 72, unknown 35.1
1941 Male, age 53, unknown 34.0
2590 Female, age 75, unknown 29.5
1851 Male, age 51, unknown 27.0
1916 Female, age 42, unknown 26.0
2665 Male, age 74, both hemispheres 22.1
2699 Male, age 18, unknown 22.0
2409 Female, age 72, unknown 21.7
2583 Male, age 75, right hemisphere 20.9
Superior colliculus
nTPM: 32.9
1796 Male, age 53, unknown 41.9
2261 Male, age 18, unknown 41.6
1895 Male, age 76, right hemisphere 41.4
1839 Male, age 51, unknown 41.0
2087 Female, age 72, unknown 34.0
2587 Male, age 74, left hemisphere 32.1
2668 Female, age 75, unknown 28.1
2664 Male, age 75, both hemispheres 24.9
1913 Female, age 42, unknown 23.6
1995 Male, age 72, unknown 20.1
Ventral tegmental area
nTPM: 31.1
2218 Male, age 76, both hemispheres 36.2
1942 Male, age 51, unknown 32.6
2410 Female, age 72, unknown 32.5
2021 Male, age 53, unknown 32.1
1915 Female, age 42, unknown 28.6
2223 Female, age 72, unknown 24.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.9
Samples: 139

Max nTPM: 168.5
Min nTPM: 10.0
Std nTPM: 28.7
Median nTPM: 37.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 168.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 155.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 130.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 129.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 102.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 101.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 99.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 97.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 96.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 94.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 88.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.7
Samples: 4

Max nTPM: 83.1
Min nTPM: 74.8
Sample A Male 74.8
Sample B Male 83.1
Sample C Female 79.6
Sample D Female 81.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
583576 Antisense, RP_040831_02_G09, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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