MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:273.3 nTPM
HPA:273.3 nTPM
GTEx:323.7 nTPM
FANTOM5:271.0 Scaled Tags Per Million
Mouse:167.6 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 273.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 257.6
1870 Female, age 42, unknown 270.4
1830 Male, age 51, unknown 262.2
1833 Male, age 53, unknown 262.0
2411 Female, age 72, unknown 259.8
2019 Male, age 18, unknown 259.7
1827 Male, age 72, unknown 259.0
2828 Female, age 72, unknown 258.7
2666 Male, age 74, left hemisphere 255.9
2219 Male, age 76, both hemispheres 250.2
2586 Male, age 75, left hemisphere 238.5
Dorsal raphe nucleus
nTPM: 248.2
2750 Male, age 76, both hemispheres 258.1
2016 Female, age 72, unknown 254.9
1828 Male, age 53, unknown 250.8
2298 Female, age 72, unknown 242.9
2047 Male, age 72, unknown 234.0
Inferior colliculus
nTPM: 256.4
2849 Male, age 72, unknown 265.8
1848 Female, age 42, unknown 256.7
1890 Male, age 53, unknown 251.8
2097 Female, age 72, unknown 251.2
Median raphe nucleus
nTPM: 244.1
2220 Male, age 76, midline 244.1
Pedunculopontine tegmental nucleus
nTPM: 260.6
2334 Male, age 80, both hemispheres 271.1
2338 Male, age 61, both hemispheres 260.6
1921 Female, age 85, both hemispheres 250.2
Periaquaductal grey, anterior
nTPM: 249.1
2502 Female, age 75, unknown 254.8
1795 Male, age 51, unknown 246.9
1947 Male, age 18, unknown 245.7
Periaquaductal grey, dorsal
nTPM: 257.3
2850 Male, age 76, both hemispheres 271.6
2464 Female, age 72, unknown 254.3
1831 Male, age 72, unknown 252.5
1840 Male, age 53, unknown 250.9
Periaquaductal grey, lateral
nTPM: 254.2
2140 Male, age 76, both hemispheres 258.0
2053 Male, age 18, unknown 253.7
2272 Male, age 74, both hemispheres 250.9
Pretectal area
nTPM: 259.1
1817 Female, age 42, unknown 274.7
1815 Male, age 53, unknown 269.8
2007 Male, age 72, unknown 262.5
2825 Male, age 18, unknown 258.5
1816 Male, age 51, unknown 257.4
2316 Male, age 76, right hemisphere 257.4
1944 Female, age 72, unknown 256.4
2667 Female, age 75, unknown 256.2
2224 Female, age 72, unknown 253.8
2273 Male, age 74, both hemispheres 251.9
2407 Male, age 75, both hemispheres 251.7
Red nucleus
nTPM: 273.3
1865 Male, age 51, unknown 282.7
2503 Female, age 72, unknown 281.6
2725 Female, age 75, unknown 279.7
1904 Male, age 53, unknown 278.4
1954 Female, age 42, unknown 277.5
2823 Male, age 76, right hemisphere 277.3
1821 Female, age 72, unknown 275.2
2227 Male, age 72, unknown 273.2
2769 Male, age 72, unknown 273.0
2785 Male, age 18, unknown 270.9
2588 Male, age 74, left hemisphere 261.9
2584 Male, age 75, left hemisphere 247.9
Substantia nigra
nTPM: 247.7
1889 Female, age 72, unknown 264.1
2699 Male, age 18, unknown 260.6
2590 Female, age 75, unknown 250.4
2665 Male, age 74, both hemispheres 250.4
2583 Male, age 75, right hemisphere 247.9
1851 Male, age 51, unknown 245.5
2409 Female, age 72, unknown 243.9
1941 Male, age 53, unknown 238.9
2241 Male, age 72, unknown 238.1
1916 Female, age 42, unknown 237.2
Superior colliculus
nTPM: 258.5
1913 Female, age 42, unknown 277.9
1995 Male, age 72, unknown 276.9
2587 Male, age 74, left hemisphere 268.4
1895 Male, age 76, right hemisphere 261.6
1839 Male, age 51, unknown 258.4
1796 Male, age 53, unknown 253.0
2087 Female, age 72, unknown 251.7
2261 Male, age 18, unknown 248.1
2668 Female, age 75, unknown 245.9
2664 Male, age 75, both hemispheres 242.8
Ventral tegmental area
nTPM: 249.8
2223 Female, age 72, unknown 259.0
2021 Male, age 53, unknown 252.0
2410 Female, age 72, unknown 251.8
2218 Male, age 76, both hemispheres 249.2
1915 Female, age 42, unknown 243.9
1942 Male, age 51, unknown 242.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 323.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 323.7
Samples: 139

Max nTPM: 598.7
Min nTPM: 193.2
Std nTPM: 75.1
Median nTPM: 308.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 598.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 558.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 523.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 518.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 513.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 489.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 467.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 453.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 449.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 444.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 430.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 271.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 271.0
FF:10158-103A5 76 years, female 271.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 167.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.6
Samples: 4

Max nTPM: 175.1
Min nTPM: 158.7
Sample A Male 175.1
Sample B Male 158.7
Sample C Female 171.4
Sample D Female 165.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
293892 Antisense, RP_040617_01_E01, Mouse strain C57BL/6J (56 days, male) 3.0

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