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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:277.7 nTPM
HPA:277.7 nTPM
GTEx:394.3 nTPM
FANTOM5:295.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 277.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 268.4
1981 Female, age 72, midline 277.1
2048 Male, age 55, midline 272.1
2816 Male, age 47, midline 268.5
2194 Female, age 79, both hemispheres 262.7
2565 Male, age 75, midline 261.7
Cervical spinal cord, dorsal horn
nTPM: 269.6
2296 Male, age 66, both hemispheres 290.0
2173 Female, age 72, unknown 287.2
1877 Male, age 55, unknown 268.2
2069 Male, age 47, both hemispheres 266.5
2297 Male, age 75, both hemispheres 254.9
2721 Male, age 90, both hemispheres 250.8
Cervical spinal cord, ventral horn
nTPM: 277.7
2480 Male, age 75, both hemispheres 296.2
2809 Male, age 90, both hemispheres 284.7
2295 Male, age 66, both hemispheres 280.5
2098 Female, age 72, unknown 280.0
2068 Male, age 55, unknown 268.0
2820 Female, age 79, both hemispheres 257.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 394.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 394.3
Samples: 159

Max nTPM: 638.1
Min nTPM: 225.5
Std nTPM: 76.0
Median nTPM: 385.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 638.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 614.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 603.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 591.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 565.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 555.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 539.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 528.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 527.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 512.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 511.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 504.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 503.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 498.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 494.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 493.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 483.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 480.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 478.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 474.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 473.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 472.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 463.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 460.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 457.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 457.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 455.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 454.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 453.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 453.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 452.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 451.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 450.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 447.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 445.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 444.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 444.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 443.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 443.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 442.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 441.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 440.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 437.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 436.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 434.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 434.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 434.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 432.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 431.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 428.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 427.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 426.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 421.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 421.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 421.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 420.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 419.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 417.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 416.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 413.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 413.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 413.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 410.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 409.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 409.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 407.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 405.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 404.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 401.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 401.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 399.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 397.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 396.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 395.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 393.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 392.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 390.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 388.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 387.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 385.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 385.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 383.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 382.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 381.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 381.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 378.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 378.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 378.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 378.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 376.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 375.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 375.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 373.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 372.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 372.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 370.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 369.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 368.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 367.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 367.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 367.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 367.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 366.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 366.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 366.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 364.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 363.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 362.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 362.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 361.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 356.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 354.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 354.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 353.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 352.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 351.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 350.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 350.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 349.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 349.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 345.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 344.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 338.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 337.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 337.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 337.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 336.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 334.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 334.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 326.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 326.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 324.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 322.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 321.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 318.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 315.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 314.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 313.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 313.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 310.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 308.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 308.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 304.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 303.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 296.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 292.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 287.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 283.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 282.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 279.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 276.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 273.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 265.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 252.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 251.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 250.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 247.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 232.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 225.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 295.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 295.3
FF:10181-103D1 60 years, female 302.3
FF:10159-103A6 76 years, female 288.3

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