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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
HIPPOCAMPUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:932.5 nTPM
GTEx:611.1 nTPM
FANTOM5:182.6 Scaled Tags Per Million

HIPPOCAMPUS - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 932.5
Sample id Sample description nTPM
Hippocampus
nTPM: 932.5
1898 Male, age 80, left hemisphere 960.8
2529 Female, age 94, left hemisphere 939.1
2148 Female, age 91, left hemisphere 925.4
1911 Female, age 85, right hemisphere 924.8
1855 Male, age 76, left hemisphere 923.9
2621 Female, age 67, right hemisphere 920.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 611.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 611.1
Samples: 197

Max nTPM: 2010.9
Min nTPM: 306.4
Std nTPM: 213.4
Median nTPM: 589.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2010.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1447.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1387.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1231.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1124.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1108.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1067.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1008.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 942.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 937.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 933.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 909.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 892.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 890.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 887.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 871.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 864.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 863.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 854.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 851.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 846.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 845.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 840.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 840.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 839.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 826.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 812.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 804.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 796.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 781.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 773.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 764.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 754.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 751.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 747.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 743.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 733.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 728.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 723.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 722.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 721.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 715.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 709.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 709.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 708.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 708.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 707.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 704.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 703.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 703.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 699.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 699.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 690.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 688.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 681.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 677.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 676.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 673.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 671.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 671.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 670.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 665.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 661.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 656.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 654.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 653.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 650.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 649.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 644.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 643.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 642.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 641.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 639.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 633.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 632.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 630.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 630.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 625.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 625.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 624.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 622.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 620.7
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 618.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 616.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 615.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 613.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 612.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 612.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 610.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 609.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 609.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 603.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 602.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 601.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 599.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 598.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 592.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 592.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 589.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 587.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 579.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 579.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 578.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 573.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 573.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 571.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 567.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 563.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 560.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 549.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 545.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 543.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 542.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 541.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 540.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 540.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 539.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 537.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 536.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 535.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 528.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 522.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 520.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 519.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 519.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 517.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 513.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 508.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 508.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 504.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 503.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 503.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 496.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 496.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 495.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 493.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 492.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 490.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 489.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 483.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 480.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 480.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 478.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 470.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 466.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 465.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 462.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 459.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 457.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 457.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 456.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 454.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 451.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 450.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 449.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 449.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 447.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 446.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 444.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 441.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 440.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 440.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 439.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 439.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 438.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 432.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 430.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 429.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 428.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 428.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 422.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 422.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 421.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 412.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 409.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 399.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 398.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 398.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 382.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 380.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 378.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 375.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 373.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 368.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 366.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 360.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 359.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 356.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 354.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 352.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 349.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 339.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 337.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 321.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 318.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 308.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 306.4
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 182.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 182.6
FF:10153-102I9 76 years, female 183.3
FF:10169-103B7 60 years, female 182.0

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