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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:950.1 nTPM
GTEx:689.2 nTPM
FANTOM5:264.1 Scaled Tags Per Million
Pig:50.8 nTPM

PUTAMEN - Annotated protein expression
Pending normal tissue analysis

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 950.1
Sample id Sample description nTPM
Putamen
nTPM: 950.1
2466 Female, age 79, unknown 968.1
1838 Male, age 80, right hemisphere 966.9
1937 Female, age 91, right hemisphere 961.5
1829 Male, age 74, unknown 951.4
2482 Female, age 94, left hemisphere 946.3
2647 Male, age 75, left hemisphere 934.3
2489 Female, age 72, unknown 922.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 689.2
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 689.2
Samples: 205

Max nTPM: 1533.2
Min nTPM: 252.1
Std nTPM: 200.2
Median nTPM: 674.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1533.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1327.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1321.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1296.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1196.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1191.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1190.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1158.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1151.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1146.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1064.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1052.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1047.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1007.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1006.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 974.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 965.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 958.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 951.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 933.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 932.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 912.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 907.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 907.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 897.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 890.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 887.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 887.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 884.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 879.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 878.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 842.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 842.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 837.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 837.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 835.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 832.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 829.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 823.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 822.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 819.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 817.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 814.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 810.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 805.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 794.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 793.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 792.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 786.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 783.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 779.3
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 778.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 777.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 775.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 774.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 772.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 768.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 764.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 764.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 762.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 756.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 756.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 751.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 750.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 747.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 746.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 746.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 745.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 744.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 739.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 738.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 738.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 736.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 735.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 734.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 734.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 730.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 728.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 726.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 723.0
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 709.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 707.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 706.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 705.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 703.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 703.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 702.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 701.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 691.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 691.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 688.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 688.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 686.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 684.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 682.6
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 682.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 681.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 681.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 681.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 678.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 678.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 677.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 674.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 674.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 673.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 665.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 664.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 663.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 662.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 659.4
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 657.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 654.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 649.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 648.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 644.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 644.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 639.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 637.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 637.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 633.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 630.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 630.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 627.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 624.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 620.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 618.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 616.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 614.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 606.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 606.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 605.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 601.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 600.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 595.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 595.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 591.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 588.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 587.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 586.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 583.1
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 580.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 577.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 572.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 572.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 567.4
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 566.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 562.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 559.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 557.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 556.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 552.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 552.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 551.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 543.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 542.7
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 540.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 536.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 536.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 533.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 533.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 532.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 528.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 527.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 524.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 521.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 512.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 512.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 510.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 509.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 508.5
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 507.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 499.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 498.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 497.9
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 493.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 492.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 484.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 481.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 481.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 477.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 477.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 458.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 455.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 452.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 451.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 451.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 449.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 449.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 446.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 445.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 443.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 439.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 437.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 437.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 436.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 426.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 418.8
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 418.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 413.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 412.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 406.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 406.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 394.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 289.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 252.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 264.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 264.1
FF:10176-103C5 60 years, female 264.1

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.8
Pig sample Sample description nTPM
Putamen
nTPM: 50.8
Samples: 4

Max nTPM: 68.2
Min nTPM: 42.5
Sample A Female 42.7
Sample B Female 42.5
Sample C Male 68.2
Sample D Male 49.6

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  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.