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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:831.4 nTPM
HPA:831.4 nTPM
GTEx:647.2 nTPM
FANTOM5:1074.4 Scaled Tags Per Million
Pig:398.0 nTPM
Mouse:1226.9 nTPM
Allen mouse:27.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 831.4
Sample id Sample description nTPM
Amygdala
nTPM: 831.4
1987 Female, age 91, left hemisphere 914.8
2814 Male, age 76, right hemisphere 837.1
2517 Female, age 94, left hemisphere 810.5
2514 Male, age 75, right hemisphere 797.4
2695 Female, age 67, right hemisphere 797.1
Basal amygdala
nTPM: 701.0
2110 Male, age 80, left hemisphere 794.2
1955 Male, age 76, both hemispheres 760.3
2609 Male, age 75, right hemisphere 737.3
2243 Female, age 91, right hemisphere 735.3
2685 Female, age 94, left hemisphere 728.9
2827 Female, age 67, right hemisphere 450.2
Central amygdala
nTPM: 772.2
2826 Female, age 94, left hemisphere 816.9
1905 Male, age 76, both hemispheres 816.7
2515 Male, age 75, right hemisphere 805.6
2701 Female, age 91, right hemisphere 713.5
2239 Male, age 80, left hemisphere 708.3
Corticomedial amygdala
nTPM: 692.9
2829 Male, age 80, left hemisphere 777.5
2428 Male, age 75, right hemisphere 756.8
2242 Female, age 91, right hemisphere 742.4
2429 Female, age 94, left hemisphere 724.3
2240 Male, age 76, both hemispheres 699.2
2535 Female, age 67, right hemisphere 457.5
Lateral amygdala
nTPM: 695.3
1883 Male, age 76, both hemispheres 800.0
2534 Female, age 94, left hemisphere 785.9
2516 Male, age 75, right hemisphere 721.1
2255 Female, age 91, right hemisphere 706.4
2256 Male, age 80, left hemisphere 685.8
2830 Female, age 67, right hemisphere 472.4
Stria terminalis, bed nucleus
nTPM: 754.2
1974 Female, age 91, both hemispheres 861.9
2486 Female, age 94, both hemispheres 726.8
2201 Male, age 74, unknown 674.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 647.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 647.2
Samples: 152

Max nTPM: 1117.1
Min nTPM: 338.0
Std nTPM: 151.0
Median nTPM: 638.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1117.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1064.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1038.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1024.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 933.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 911.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 909.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 896.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 883.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 881.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 878.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 875.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 874.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 873.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 850.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 841.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 824.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 820.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 816.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 806.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 798.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 797.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 793.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 788.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 787.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 786.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 772.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 770.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 762.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 759.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 758.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 757.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 756.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 752.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 751.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 743.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 742.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 741.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 739.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 737.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 735.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 734.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 730.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 729.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 726.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 717.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 716.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 715.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 715.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 707.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 706.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 705.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 698.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 697.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 695.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 691.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 690.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 686.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 677.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 674.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 673.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 668.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 667.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 665.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 664.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 664.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 658.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 654.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 653.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 651.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 650.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 648.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 646.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 644.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 643.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 641.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 635.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 633.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 632.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 632.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 630.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 630.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 629.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 628.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 625.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 624.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 623.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 615.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 614.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 614.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 613.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 612.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 610.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 609.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 605.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 604.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 604.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 598.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 597.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 597.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 597.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 593.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 588.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 587.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 586.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 586.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 581.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 578.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 578.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 576.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 572.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 571.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 570.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 570.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 560.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 548.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 544.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 544.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 538.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 526.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 525.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 519.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 517.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 516.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 505.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 505.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 502.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 488.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 481.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 467.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 466.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 465.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 443.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 443.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 434.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 434.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 426.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 423.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 422.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 419.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 416.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 410.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 408.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 406.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 402.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 402.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 391.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 388.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 377.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 361.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 359.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 338.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1074.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1074.4
FF:10151-102I7 76 years, female 1074.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 398.0
Pig sample Sample description nTPM
Amygdala
nTPM: 398.0
Samples: 4

Max nTPM: 512.8
Min nTPM: 319.6
Sample A Female 512.8
Sample B Female 319.6
Sample C Male 402.7
Sample D Male 356.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1226.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1226.9
Samples: 4

Max nTPM: 1301.7
Min nTPM: 1157.3
Sample A Male 1301.7
Sample B Male 1157.3
Sample C Female 1252.0
Sample D Female 1196.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 27.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.6
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 35.0
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 20.2
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 18.3

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