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BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1325.1 nTPM
HPA:1325.1 nTPM
FANTOM5:1294.8 Scaled Tags Per Million
Pig:529.3 nTPM
Mouse:1528.9 nTPM

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 1325.1
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 760.5
1920 Male, age 76, both hemispheres 760.5
Anterior funiculus (white matter)
nTPM: 1151.3
2193 Male, age 75, both hemispheres 1445.6
2819 Male, age 47, both hemispheres 1183.0
2818 Female, age 79, both hemispheres 1171.3
2734 Male, age 80, both hemispheres 805.3
Area striata (white matter)
nTPM: 765.0
2258 Female, age 91, left hemisphere 765.0
Cerebellar white matter
nTPM: 838.4
2105 Male, age 74, right hemisphere 917.3
1931 Female, age 91, left hemisphere 909.6
1864 Male, age 80, left hemisphere 851.5
1837 Male, age 76, left hemisphere 808.1
2174 Male, age 61, right hemisphere 785.1
2773 Female, age 85, right hemisphere 758.9
Corpus callosum, genu (white matter)
nTPM: 1070.0
2771 Male, age 75, left hemisphere 1417.0
1885 Female, age 94, left hemisphere 1122.2
1886 Female, age 67, right hemisphere 1054.1
1849 Female, age 91, right hemisphere 1038.5
1934 Male, age 61, right hemisphere 960.5
1887 Male, age 76, left hemisphere 828.0
Corpus callosum, splenium (white matter)
nTPM: 1105.7
2847 Female, age 67, right hemisphere 1492.2
2104 Male, age 75, left hemisphere 1325.5
2238 Female, age 94, right hemisphere 814.5
1946 Male, age 76, left hemisphere 790.6
Dorsal funiculus (white matter)
nTPM: 1306.2
2128 Male, age 75, both hemispheres 1582.2
2064 Female, age 79, both hemispheres 1326.3
2810 Male, age 90, both hemispheres 1294.3
2817 Male, age 47, both hemispheres 1181.6
2812 Male, age 66, both hemispheres 1146.3
Lateral funiculus (white matter)
nTPM: 1325.1
2294 Male, age 66, both hemispheres 1376.8
2192 Male, age 75, both hemispheres 1361.5
2099 Male, age 90, both hemispheres 1307.7
2094 Female, age 79, both hemispheres 1254.4
Occipital cortex (white matter)
nTPM: 985.8
2259 Male, age 75, midline 1187.2
2257 Female, age 67, both hemispheres 784.4
Parahippocampal cortex (white matter)
nTPM: 805.7
2157 Female, age 91, both hemispheres 805.7
Parieto-temporal junction (white matter)
nTPM: 885.3
1999 Female, age 67, right hemisphere 1138.1
1935 Female, age 94, right hemisphere 871.6
2770 Female, age 91, right hemisphere 860.1
2774 Male, age 61, right hemisphere 849.4
2469 Male, age 75, right hemisphere 805.5
2121 Male, age 76, left hemisphere 787.0
Somatomor cortex, precentral gyrus (white matter)
nTPM: 650.8
2439 Male, age 75, right hemisphere 650.8
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 680.7
2623 Male, age 75, right hemisphere 680.7
Temporal white matter
nTPM: 796.7
2736 Female, age 91, right hemisphere 987.5
1801 Male, age 76, left hemisphere 874.0
2254 Male, age 75, right hemisphere 803.7
2523 Female, age 94, left hemisphere 740.7
2524 Female, age 85, left hemisphere 577.5

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1294.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 1294.8
FF:10042-101F6 24-68 years, mixed 1294.8

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 529.3
Pig sample Sample description nTPM
Corpus callosum
nTPM: 529.3
Samples: 4

Max nTPM: 643.3
Min nTPM: 464.9
Sample A Female 464.9
Sample B Female 508.6
Sample C Male 643.3
Sample D Male 500.3

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1528.9
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 1528.9
Samples: 3

Max nTPM: 1587.8
Min nTPM: 1428.7
Sample A Male 1570.3
Sample B Male 1587.8
Sample D Female 1428.7

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