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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1025.9 nTPM
HPA:1025.9 nTPM
GTEx:682.2 nTPM
FANTOM5:1255.6 Scaled Tags Per Million
Pig:787.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1025.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1025.9
1981 Female, age 72, midline 1206.6
2565 Male, age 75, midline 1177.4
2048 Male, age 55, midline 948.4
2816 Male, age 47, midline 905.7
2194 Female, age 79, both hemispheres 891.3
Cervical spinal cord, dorsal horn
nTPM: 1021.2
2069 Male, age 47, both hemispheres 1176.2
2173 Female, age 72, unknown 1165.7
2296 Male, age 66, both hemispheres 1111.7
1877 Male, age 55, unknown 957.8
2721 Male, age 90, both hemispheres 903.0
2297 Male, age 75, both hemispheres 813.2
Cervical spinal cord, ventral horn
nTPM: 951.1
2098 Female, age 72, unknown 1389.8
2809 Male, age 90, both hemispheres 1044.8
2295 Male, age 66, both hemispheres 909.0
2068 Male, age 55, unknown 837.5
2480 Male, age 75, both hemispheres 802.7
2820 Female, age 79, both hemispheres 723.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 682.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 682.2
Samples: 159

Max nTPM: 2617.9
Min nTPM: 379.1
Std nTPM: 211.3
Median nTPM: 666.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2617.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1090.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1061.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1008.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1004.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 966.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 961.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 959.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 933.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 928.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 928.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 924.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 885.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 884.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 884.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 872.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 870.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 862.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 857.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 855.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 848.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 845.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 837.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 823.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 821.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 817.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 814.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 802.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 801.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 801.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 797.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 794.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 792.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 787.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 786.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 772.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 772.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 767.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 767.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 764.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 764.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 758.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 757.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 751.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 748.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 744.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 744.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 740.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 735.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 732.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 728.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 728.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 727.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 722.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 715.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 712.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 711.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 711.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 708.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 705.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 702.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 702.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 701.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 699.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 699.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 697.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 696.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 690.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 687.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 687.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 685.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 682.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 674.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 674.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 671.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 669.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 668.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 667.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 666.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 666.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 664.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 660.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 659.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 654.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 652.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 649.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 640.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 637.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 637.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 635.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 634.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 633.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 629.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 627.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 624.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 623.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 621.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 618.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 613.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 612.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 607.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 606.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 604.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 603.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 600.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 598.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 598.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 596.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 595.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 595.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 592.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 583.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 582.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 582.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 582.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 578.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 577.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 574.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 574.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 564.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 561.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 555.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 555.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 553.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 552.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 551.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 550.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 548.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 545.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 540.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 536.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 535.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 535.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 529.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 528.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 504.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 501.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 494.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 491.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 490.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 486.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 486.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 484.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 484.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 482.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 475.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 472.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 463.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 456.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 454.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 446.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 443.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 436.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 436.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 433.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 426.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 417.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 392.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 379.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1255.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1255.6
FF:10181-103D1 60 years, female 1304.0
FF:10159-103A6 76 years, female 1207.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 787.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 683.6
Samples: 4

Max nTPM: 802.0
Min nTPM: 622.2
Sample A Female 684.2
Sample B Female 626.0
Sample C Male 802.0
Sample D Male 622.2
Ventral spinal cord
nTPM: 787.3
Samples: 4

Max nTPM: 826.2
Min nTPM: 726.9
Sample A Female 826.2
Sample B Female 771.3
Sample C Male 824.6
Sample D Male 726.9

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