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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:665.2 nTPM
GTEx:665.2 nTPM
FANTOM5:1163.4 Scaled Tags Per Million
Pig:119.1 nTPM
Mouse:773.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 665.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 665.2
Samples: 105

Max nTPM: 978.5
Min nTPM: 257.2
Std nTPM: 120.0
Median nTPM:
237_1 82 years, male 978.5
99_1 64 years, male 913.6
172_1 72 years, female 886.8
322_1 76 years, male 884.4
173_1 67 years, male 856.1
316_1 62 years, male 846.6
321_1 62 years, female 845.7
350_1 84 years, female 816.5
218_1 71 years, female 806.6
452_1 88 years, female 793.7
229_1 69 years, female 792.1
375_1 74 years, female 783.3
353_1 82 years, female 779.1
352_1 62 years, male 777.3
377_1 82 years, female 767.2
386_1 76 years, male 766.7
35_1 74 years, female 765.0
506_1 65 years, male 763.2
405_1 91 years, male 752.7
351_1 91 years, male 749.7
6_1 73 years, female 746.3
177_1 74 years, male 744.8
319_1 81 years, male 741.9
384_1 83 years, male 740.7
243_1 75 years, male 739.1
379_1 60 years, male 738.3
480_1 63 years, male 738.3
406_1 79 years, male 736.3
145_1 84 years, male 735.0
189_1 76 years, male 734.7
320_1 89 years, female 734.1
286_1 68 years, female 728.8
355_1 70 years, female 724.2
17_1 71 years, male 720.9
526_1 61 years, male 711.0
292_1 71 years, male 710.1
264_1 73 years, female 709.1
251_1 78 years, male 707.7
518_1 75 years, female 701.8
295_1 61 years, female 701.2
347_1 72 years, male 701.2
376_1 75 years, female 697.8
349_1 83 years, male 697.6
318_1 68 years, male 694.2
163_1 78 years, male 692.1
266_1 85 years, male 691.9
335_1 73 years, female 691.9
404_1 82 years, female 690.5
137_1 83 years, male 688.9
389_1 86 years, female 687.3
120_1 70 years, female 686.6
18_1 88 years, male 684.9
293_1 68 years, female 683.3
4_1 88 years, female 682.0
324_1 76 years, male 680.5
447_1 81 years, male 673.1
394_1 75 years, female 671.9
115_1 83 years, male 669.9
308_1 70 years, female 669.0
354_1 81 years, female 666.9
153_1 70 years, female 665.7
246_1 77 years, male 660.7
2_1 77 years, female 660.3
126_1 63 years, male 659.5
317_1 60 years, male 658.3
291_1 76 years, male 657.1
42_1 85 years, male 655.2
425_1 59 years, female 652.7
348_1 84 years, male 646.0
9_1 66 years, female 644.2
396_1 62 years, male 635.4
311_1 78 years, male 634.4
356_1 87 years, female 633.1
503_1 68 years, male 616.9
517_1 88 years, male 614.2
265_1 87 years, male 605.5
109_1 81 years, female 596.8
81_1 67 years, male 596.7
307_1 66 years, female 596.6
254_1 77 years, female 593.3
41_1 94 years, female 584.6
43_1 64 years, female 582.1
139_1 64 years, female 579.3
288_1 66 years, female 577.0
468_1 89 years, male 574.8
142_1 61 years, female 573.3
313_1 79 years, female 568.1
117_1 61 years, male 565.0
501_1 88 years, male 553.6
119_1 70 years, female 552.2
315_1 62 years, female 551.8
162_1 79 years, female 549.0
314_1 67 years, male 548.8
217_1 76 years, male 545.6
499_1 55 years, female 545.4
495_1 57 years, female 513.6
32_1 67 years, male 491.9
415_1 77 years, female 475.5
466_1 57 years, female 471.4
414_1 84 years, female 451.3
89_1 63 years, male 446.1
149_1 88 years, male 416.6
413_1 59 years, female 333.4
491_1 89 years, female 287.2
490_1 67 years, female 257.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1163.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1163.4
FF:10030-101E3 24-65 years, mixed 1163.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 119.1
Pig sample Sample description nTPM
Retina
nTPM: 119.0
Samples: 4

Max nTPM: 129.3
Min nTPM: 106.5
Sample A Female 113.0
Sample B Female 129.3
Sample C Male 127.3
Sample D Male 106.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 773.7
Mouse sample Sample description nTPM
Retina
nTPM: 773.7
Samples: 4

Max nTPM: 842.8
Min nTPM: 675.2
Sample A Male 842.8
Sample B Male 738.0
Sample C Female 838.9
Sample D Female 675.2

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by the Knut & Alice Wallenberg Foundation.