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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1048.8 nTPM
HPA:1048.8 nTPM
FANTOM5:1248.1 Scaled Tags Per Million
Pig:634.8 nTPM
Mouse:1104.9 nTPM
Allen mouse:20.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 1048.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 1048.8
2396 Male, age 61, right hemisphere 1438.8
2032 Female, age 42, unknown 881.1
2497 Male, age 66, unknown 826.4
Centromedial thalamic nucleus
nTPM: 739.3
2401 Male, age 76, right hemisphere 813.4
2279 Female, age 85, left hemisphere 665.1
Habenula
nTPM: 931.5
1957 Male, age 80, both hemispheres 984.8
2276 Male, age 66, unknown 948.3
2252 Male, age 62, unknown 904.5
2203 Male, age 61, left hemisphere 888.4
Lateral geniculate body
nTPM: 914.5
2106 Female, age 67, right hemisphere 994.9
2035 Female, age 72, unknown 970.7
1953 Male, age 62, unknown 951.0
2575 Female, age 94, right hemisphere 903.9
2399 Male, age 61, left hemisphere 893.3
2857 Male, age 74, right hemisphere 882.7
2659 Male, age 66, unknown 866.7
2841 Male, age 80, both hemispheres 852.7
Lateral thalamic nuclei
nTPM: 930.9
2765 Female, age 67, both hemispheres 1050.7
2573 Female, age 94, left hemisphere 1031.1
2577 Male, age 74, both hemispheres 1005.4
1903 Male, age 76, left hemisphere 841.2
2661 Female, age 72, unknown 726.3
Medial dorsal thalamic nucleus
nTPM: 953.8
2572 Female, age 94, right hemisphere 1309.8
1971 Male, age 61, right hemisphere 1102.1
2492 Male, age 75, right hemisphere 1046.6
2576 Male, age 74, both hemispheres 1012.9
2498 Male, age 66, unknown 1009.9
1810 Male, age 48, unknown 962.8
2026 Male, age 62, unknown 947.9
2039 Female, age 72, unknown 923.4
2402 Female, age 67, both hemispheres 883.9
1859 Male, age 76, both hemispheres 873.9
1930 Female, age 42, unknown 848.4
2283 Male, age 80, right hemisphere 815.0
2660 Female, age 72, unknown 663.0
Medial geniculate body
nTPM: 839.8
2650 Female, age 94, left hemisphere 1089.3
1811 Female, age 42, unknown 871.1
2657 Male, age 74, right hemisphere 838.3
2571 Male, age 75, right hemisphere 816.0
2049 Male, age 76, both hemispheres 798.3
2217 Female, age 72, unknown 743.9
2207 Male, age 80, right hemisphere 721.7
Nucleus reuniens
nTPM: 792.8
2212 Female, age 67, left hemisphere 989.7
2205 Male, age 80, left hemisphere 740.4
2210 Female, age 85, left hemisphere 648.1
Nucleus rhomboideus
nTPM: 837.4
2213 Female, age 67, left hemisphere 996.3
2206 Male, age 80, both hemispheres 900.5
2280 Female, age 85, left hemisphere 615.5
Posterior thalamic nucleus
nTPM: 922.7
2649 Female, age 94, both hemispheres 1200.5
2655 Male, age 74, right hemisphere 884.1
2266 Male, age 76, right hemisphere 825.0
2495 Female, age 67, right hemisphere 781.2
Pulvinar
nTPM: 866.9
2499 Male, age 66, unknown 989.2
1972 Male, age 62, unknown 937.5
1932 Male, age 80, right hemisphere 936.3
2398 Male, age 61, left hemisphere 926.2
1899 Female, age 42, unknown 852.6
1929 Male, age 48, unknown 852.6
2214 Male, age 76, right hemisphere 824.9
2724 Male, age 74, right hemisphere 823.1
2582 Female, age 72, unknown 804.1
2496 Female, age 67, right hemisphere 722.4
Subthalamic nucleus
nTPM: 815.1
2124 Male, age 62, unknown 890.1
2282 Male, age 61, both hemispheres 829.3
2779 Female, age 42, unknown 828.0
2406 Female, age 72, unknown 816.8
2658 Male, age 74, both hemispheres 808.9
2056 Female, age 72, unknown 805.8
2275 Male, age 66, unknown 802.4
2216 Male, age 48, unknown 739.4
Ventral posterolateral thalamic nucleus
nTPM: 866.8
2397 Male, age 61, right hemisphere 1003.2
2570 Male, age 75, right hemisphere 952.5
2197 Male, age 80, both hemispheres 910.8
2578 Male, age 74, both hemispheres 897.4
2740 Male, age 76, right hemisphere 816.2
2581 Female, age 72, unknown 620.5
Ventral posteromedial thalamic nucleus
nTPM: 939.4
2653 Male, age 74, both hemispheres 1057.2
2281 Male, age 75, right hemisphere 1051.0
2202 Male, age 61, left hemisphere 965.5
2758 Male, age 80, both hemispheres 818.9
2127 Male, age 76, right hemisphere 804.2
Ventral thalamic nuclei
nTPM: 861.9
2652 Male, age 74, left hemisphere 964.5
1845 Male, age 48, unknown 937.0
2580 Male, age 66, unknown 891.4
1912 Female, age 42, unknown 861.3
1860 Male, age 76, both hemispheres 854.8
2285 Male, age 62, unknown 843.4
2291 Female, age 72, unknown 842.1
2204 Male, age 80, both hemispheres 842.0
2858 Female, age 72, unknown 721.0
Ventromedial nucleus
nTPM: 919.5
1982 Female, age 72, unknown 984.0
1822 Female, age 42, unknown 854.9
Zona incerta
nTPM: 729.5
2215 Male, age 66, unknown 798.3
2208 Male, age 80, right hemisphere 755.9
2822 Male, age 74, right hemisphere 706.8
2403 Male, age 62, unknown 697.6
2663 Female, age 72, unknown 688.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1248.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1248.1
FF:10154-103A1 76 years, female 1248.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 634.8
Pig sample Sample description nTPM
Thalamus
nTPM: 634.8
Samples: 4

Max nTPM: 776.5
Min nTPM: 529.8
Sample A Female 776.5
Sample B Female 529.8
Sample C Male 604.3
Sample D Male 628.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1104.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 1104.9
Samples: 4

Max nTPM: 1124.3
Min nTPM: 1095.3
Sample A Male 1097.5
Sample B Male 1124.3
Sample C Female 1095.3
Sample D Female 1102.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 20.7
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 26.2
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 15.1
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 12.6

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