MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:488.9 nTPM
HPA:488.9 nTPM
GTEx:527.6 nTPM
FANTOM5:152.0 Scaled Tags Per Million
Pig:101.7 nTPM
Mouse:23.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 488.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 437.2
2828 Female, age 72, unknown 466.6
1870 Female, age 42, unknown 459.9
1830 Male, age 51, unknown 445.1
2666 Male, age 74, left hemisphere 444.3
2411 Female, age 72, unknown 439.1
2586 Male, age 75, left hemisphere 432.5
1833 Male, age 53, unknown 430.3
1827 Male, age 72, unknown 428.1
2019 Male, age 18, unknown 419.3
2219 Male, age 76, both hemispheres 406.8
Dorsal raphe nucleus
nTPM: 488.9
2047 Male, age 72, unknown 551.2
2298 Female, age 72, unknown 494.1
2016 Female, age 72, unknown 480.2
1828 Male, age 53, unknown 472.9
2750 Male, age 76, both hemispheres 445.9
Inferior colliculus
nTPM: 433.9
2097 Female, age 72, unknown 439.8
1848 Female, age 42, unknown 436.4
1890 Male, age 53, unknown 434.7
2849 Male, age 72, unknown 424.9
Median raphe nucleus
nTPM: 453.1
2220 Male, age 76, midline 453.1
Pedunculopontine tegmental nucleus
nTPM: 438.8
2338 Male, age 61, both hemispheres 450.3
2334 Male, age 80, both hemispheres 443.9
1921 Female, age 85, both hemispheres 422.3
Periaquaductal grey, anterior
nTPM: 462.9
1947 Male, age 18, unknown 475.6
2502 Female, age 75, unknown 457.4
1795 Male, age 51, unknown 455.7
Periaquaductal grey, dorsal
nTPM: 448.5
2850 Male, age 76, both hemispheres 475.3
1840 Male, age 53, unknown 451.2
2464 Female, age 72, unknown 437.1
1831 Male, age 72, unknown 430.2
Periaquaductal grey, lateral
nTPM: 479.9
2140 Male, age 76, both hemispheres 501.4
2053 Male, age 18, unknown 493.1
2272 Male, age 74, both hemispheres 445.2
Pretectal area
nTPM: 439.7
2825 Male, age 18, unknown 485.7
2316 Male, age 76, right hemisphere 467.0
2273 Male, age 74, both hemispheres 466.7
2224 Female, age 72, unknown 452.0
2407 Male, age 75, both hemispheres 447.9
2667 Female, age 75, unknown 442.8
1815 Male, age 53, unknown 422.1
1817 Female, age 42, unknown 421.7
1944 Female, age 72, unknown 413.5
2007 Male, age 72, unknown 410.4
1816 Male, age 51, unknown 406.6
Red nucleus
nTPM: 452.6
1954 Female, age 42, unknown 469.8
1865 Male, age 51, unknown 469.6
2725 Female, age 75, unknown 465.5
2769 Male, age 72, unknown 465.4
1904 Male, age 53, unknown 461.7
2227 Male, age 72, unknown 460.9
1821 Female, age 72, unknown 460.4
2503 Female, age 72, unknown 459.1
2823 Male, age 76, right hemisphere 447.7
2584 Male, age 75, left hemisphere 435.9
2588 Male, age 74, left hemisphere 424.2
2785 Male, age 18, unknown 410.8
Substantia nigra
nTPM: 461.8
1916 Female, age 42, unknown 486.2
2699 Male, age 18, unknown 482.7
1851 Male, age 51, unknown 481.0
2409 Female, age 72, unknown 478.5
2241 Male, age 72, unknown 476.1
1941 Male, age 53, unknown 470.5
2590 Female, age 75, unknown 446.7
2583 Male, age 75, right hemisphere 438.2
2665 Male, age 74, both hemispheres 430.4
1889 Female, age 72, unknown 427.4
Superior colliculus
nTPM: 432.2
2587 Male, age 74, left hemisphere 449.8
2664 Male, age 75, both hemispheres 449.0
1839 Male, age 51, unknown 440.5
1796 Male, age 53, unknown 435.7
1995 Male, age 72, unknown 432.7
1913 Female, age 42, unknown 426.9
2668 Female, age 75, unknown 426.5
2261 Male, age 18, unknown 422.7
1895 Male, age 76, right hemisphere 419.3
2087 Female, age 72, unknown 419.2
Ventral tegmental area
nTPM: 473.3
1915 Female, age 42, unknown 507.2
2223 Female, age 72, unknown 488.6
2021 Male, age 53, unknown 471.4
2410 Female, age 72, unknown 467.7
1942 Male, age 51, unknown 463.6
2218 Male, age 76, both hemispheres 441.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 527.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 527.6
Samples: 139

Max nTPM: 1848.7
Min nTPM: 170.8
Std nTPM: 255.2
Median nTPM: 447.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1848.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1789.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1132.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1125.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1092.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1021.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 987.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 958.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 920.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 907.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 888.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.0
FF:10158-103A5 76 years, female 152.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 101.7
Pig sample Sample description nTPM
Midbrain
nTPM: 70.4
Samples: 4

Max nTPM: 168.1
Min nTPM: 33.5
Sample A Female 168.1
Sample B Female 33.5
Sample C Male 41.0
Sample D Male 39.0
Periaqueductal gray
nTPM: 39.9
Samples: 3

Max nTPM: 49.6
Min nTPM: 30.4
Sample B Female 30.4
Sample C Male 49.6
Sample D Male 39.6
Substantia nigra
nTPM: 101.7
Samples: 4

Max nTPM: 135.2
Min nTPM: 79.8
Sample A Female 135.2
Sample B Female 86.9
Sample C Male 79.8
Sample D Male 104.8
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 74.0
Min nTPM: 45.7
Sample A Female 74.0
Sample B Female 58.2
Sample C Male 45.7
Sample D Male 46.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 25.3
Min nTPM: 21.5
Sample A Male 25.3
Sample B Male 24.7
Sample C Female 21.7
Sample D Female 21.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75695667 Antisense, RP_060518_04_D06, Mouse strain C57BL/6J (56 days, male) 0.2
77278967 Antisense, RP_070116_01_A03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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