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S100A6
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:488.8 nTPM
HPA:488.8 nTPM
GTEx:528.0 nTPM
FANTOM5:125.3 Scaled Tags Per Million
Pig:241.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 488.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 488.8
1981 Female, age 72, midline 545.3
2048 Male, age 55, midline 500.3
2816 Male, age 47, midline 472.3
2565 Male, age 75, midline 468.8
2194 Female, age 79, both hemispheres 457.2
Cervical spinal cord, dorsal horn
nTPM: 466.4
2173 Female, age 72, unknown 533.6
2296 Male, age 66, both hemispheres 481.5
2069 Male, age 47, both hemispheres 471.8
1877 Male, age 55, unknown 456.6
2721 Male, age 90, both hemispheres 441.4
2297 Male, age 75, both hemispheres 413.3
Cervical spinal cord, ventral horn
nTPM: 485.1
2098 Female, age 72, unknown 630.1
2809 Male, age 90, both hemispheres 516.7
2480 Male, age 75, both hemispheres 461.8
2068 Male, age 55, unknown 441.6
2295 Male, age 66, both hemispheres 432.3
2820 Female, age 79, both hemispheres 428.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 528.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 528.0
Samples: 159

Max nTPM: 1695.8
Min nTPM: 179.5
Std nTPM: 219.9
Median nTPM: 495.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1695.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1529.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1137.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1075.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 995.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 989.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 976.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 926.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 880.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 853.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 853.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 839.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 836.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 831.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 795.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 776.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 770.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 767.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 760.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 742.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 738.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 713.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 711.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 697.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 687.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 682.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 680.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 679.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 669.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 668.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 665.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 663.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 662.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 658.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 658.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 656.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 655.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 651.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 641.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 640.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 626.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 624.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 624.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 622.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 618.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 612.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 611.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 611.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 606.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 602.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 600.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 586.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 574.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 566.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 561.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 558.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 551.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 550.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 548.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 548.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 542.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 540.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 539.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 537.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 530.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 529.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 527.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 524.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 520.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 520.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 517.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 516.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 511.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 511.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 510.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 509.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 509.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 499.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 498.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 495.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 487.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 486.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 481.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 480.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 477.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 475.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 470.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 466.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 464.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 461.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 451.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 449.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 446.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 446.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 435.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 433.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 425.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 423.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 421.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 421.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 421.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 418.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 417.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 412.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 412.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 409.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 405.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 401.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 400.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 394.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 391.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 391.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 389.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 388.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 382.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 381.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 376.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 376.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 373.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 370.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 365.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 365.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 364.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 361.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 361.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 361.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 360.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 357.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 356.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 354.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 352.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 348.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 347.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 346.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 342.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 340.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 333.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 329.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 325.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 324.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 324.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 323.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 316.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 303.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 302.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 300.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 300.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 291.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 290.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 283.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 277.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 272.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 264.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 257.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 248.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 247.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 217.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 215.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 179.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 125.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 125.3
FF:10159-103A6 76 years, female 130.4
FF:10181-103D1 60 years, female 120.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 241.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 241.7
Samples: 4

Max nTPM: 284.2
Min nTPM: 190.7
Sample A Female 210.0
Sample B Female 284.2
Sample C Male 281.9
Sample D Male 190.7
Ventral spinal cord
nTPM: 234.6
Samples: 4

Max nTPM: 299.0
Min nTPM: 194.3
Sample A Female 194.3
Sample B Female 245.6
Sample C Male 199.3
Sample D Male 299.0

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