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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:486.9 nTPM
HPA:486.9 nTPM
GTEx:606.6 nTPM
FANTOM5:119.2 Scaled Tags Per Million
Pig:239.5 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 486.9
Sample id Sample description nTPM
Amygdala
nTPM: 486.9
2514 Male, age 75, right hemisphere 505.1
1987 Female, age 91, left hemisphere 489.5
2814 Male, age 76, right hemisphere 488.1
2517 Female, age 94, left hemisphere 477.1
2695 Female, age 67, right hemisphere 474.7
Basal amygdala
nTPM: 467.6
2609 Male, age 75, right hemisphere 481.9
2110 Male, age 80, left hemisphere 475.3
1955 Male, age 76, both hemispheres 471.1
2243 Female, age 91, right hemisphere 469.6
2685 Female, age 94, left hemisphere 461.5
2827 Female, age 67, right hemisphere 446.5
Central amygdala
nTPM: 472.6
1905 Male, age 76, both hemispheres 485.7
2515 Male, age 75, right hemisphere 475.7
2826 Female, age 94, left hemisphere 475.7
2239 Male, age 80, left hemisphere 468.1
2701 Female, age 91, right hemisphere 457.6
Corticomedial amygdala
nTPM: 475.6
2428 Male, age 75, right hemisphere 485.3
2829 Male, age 80, left hemisphere 483.0
2429 Female, age 94, left hemisphere 481.0
2242 Female, age 91, right hemisphere 479.3
2240 Male, age 76, both hemispheres 471.5
2535 Female, age 67, right hemisphere 453.4
Lateral amygdala
nTPM: 467.3
2516 Male, age 75, right hemisphere 486.2
1883 Male, age 76, both hemispheres 481.0
2534 Female, age 94, left hemisphere 477.5
2255 Female, age 91, right hemisphere 457.2
2256 Male, age 80, left hemisphere 455.8
2830 Female, age 67, right hemisphere 446.0
Stria terminalis, bed nucleus
nTPM: 474.3
1974 Female, age 91, both hemispheres 490.9
2486 Female, age 94, both hemispheres 466.8
2201 Male, age 74, unknown 465.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 606.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 606.6
Samples: 152

Max nTPM: 2025.5
Min nTPM: 303.8
Std nTPM: 261.5
Median nTPM: 544.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2025.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1873.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1727.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1696.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1297.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1165.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1118.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1030.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 915.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 913.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 884.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 866.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 855.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 851.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 851.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 849.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 838.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 835.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 834.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 815.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 800.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 798.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 789.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 786.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 747.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 738.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 719.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 717.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 713.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 710.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 706.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 705.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 702.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 682.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 680.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 677.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 663.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 660.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 656.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 636.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 635.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 632.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 632.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 629.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 627.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 626.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 621.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 614.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 613.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 607.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 604.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 599.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 598.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 596.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 589.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 587.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 585.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 576.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 576.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 575.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 569.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 568.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 567.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 565.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 562.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 561.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 557.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 556.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 553.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 551.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 551.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 549.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 549.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 548.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 546.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 545.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 542.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 538.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 537.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 536.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 534.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 532.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 531.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 527.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 526.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 524.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 522.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 521.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 520.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 519.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 515.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 512.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 510.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 506.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 502.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 500.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 499.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 493.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 492.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 491.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 491.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 488.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 487.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 485.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 482.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 482.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 480.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 478.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 477.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 477.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 476.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 473.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 466.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 466.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 464.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 464.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 461.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 461.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 449.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 449.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 444.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 444.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 441.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 440.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 438.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 434.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 433.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 432.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 431.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 428.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 423.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 421.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 415.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 414.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 412.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 411.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 410.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 410.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 405.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 402.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 398.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 394.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 387.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 361.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 360.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 351.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 350.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 334.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 330.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 328.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 327.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 303.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 119.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 119.2
FF:10151-102I7 76 years, female 119.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 239.5
Pig sample Sample description nTPM
Amygdala
nTPM: 239.6
Samples: 4

Max nTPM: 350.4
Min nTPM: 175.7
Sample A Female 350.4
Sample B Female 241.2
Sample C Male 190.9
Sample D Male 175.7

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