MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:488.5 nTPM
HPA:488.5 nTPM
GTEx:520.6 nTPM
FANTOM5:123.2 Scaled Tags Per Million
Pig:334.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 488.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 471.0
1870 Female, age 42, unknown 484.6
1827 Male, age 72, unknown 481.4
2411 Female, age 72, unknown 479.8
2019 Male, age 18, unknown 472.9
2828 Female, age 72, unknown 471.5
2219 Male, age 76, both hemispheres 469.4
1833 Male, age 53, unknown 465.5
1830 Male, age 51, unknown 463.2
2586 Male, age 75, left hemisphere 462.9
2666 Male, age 74, left hemisphere 458.7
Dorsal raphe nucleus
nTPM: 488.5
2298 Female, age 72, unknown 524.8
2750 Male, age 76, both hemispheres 485.4
2047 Male, age 72, unknown 482.3
1828 Male, age 53, unknown 478.2
2016 Female, age 72, unknown 471.7
Inferior colliculus
nTPM: 477.8
2097 Female, age 72, unknown 497.0
1890 Male, age 53, unknown 478.9
1848 Female, age 42, unknown 474.9
2849 Male, age 72, unknown 460.4
Median raphe nucleus
nTPM: 484.5
2220 Male, age 76, midline 484.5
Pedunculopontine tegmental nucleus
nTPM: 488.5
1921 Female, age 85, both hemispheres 490.0
2334 Male, age 80, both hemispheres 489.8
2338 Male, age 61, both hemispheres 485.7
Periaquaductal grey, anterior
nTPM: 480.7
1947 Male, age 18, unknown 485.0
1795 Male, age 51, unknown 481.2
2502 Female, age 75, unknown 475.9
Periaquaductal grey, dorsal
nTPM: 474.4
1840 Male, age 53, unknown 483.9
2850 Male, age 76, both hemispheres 476.8
1831 Male, age 72, unknown 471.8
2464 Female, age 72, unknown 465.3
Periaquaductal grey, lateral
nTPM: 474.4
2053 Male, age 18, unknown 477.6
2272 Male, age 74, both hemispheres 473.6
2140 Male, age 76, both hemispheres 472.0
Pretectal area
nTPM: 484.9
2224 Female, age 72, unknown 500.0
1816 Male, age 51, unknown 492.1
1944 Female, age 72, unknown 490.9
2007 Male, age 72, unknown 488.6
2273 Male, age 74, both hemispheres 488.5
1817 Female, age 42, unknown 487.0
2667 Female, age 75, unknown 487.0
1815 Male, age 53, unknown 485.6
2316 Male, age 76, right hemisphere 476.4
2825 Male, age 18, unknown 474.3
2407 Male, age 75, both hemispheres 463.7
Red nucleus
nTPM: 477.9
1821 Female, age 72, unknown 501.5
2503 Female, age 72, unknown 486.7
2725 Female, age 75, unknown 482.9
1865 Male, age 51, unknown 481.3
1904 Male, age 53, unknown 478.4
1954 Female, age 42, unknown 478.0
2227 Male, age 72, unknown 477.4
2785 Male, age 18, unknown 477.4
2769 Male, age 72, unknown 477.1
2823 Male, age 76, right hemisphere 476.4
2588 Male, age 74, left hemisphere 459.1
2584 Male, age 75, left hemisphere 458.2
Substantia nigra
nTPM: 482.4
1916 Female, age 42, unknown 503.1
1851 Male, age 51, unknown 495.8
2241 Male, age 72, unknown 495.6
1889 Female, age 72, unknown 494.4
1941 Male, age 53, unknown 485.1
2409 Female, age 72, unknown 479.1
2699 Male, age 18, unknown 475.8
2590 Female, age 75, unknown 468.0
2665 Male, age 74, both hemispheres 467.8
2583 Male, age 75, right hemisphere 459.5
Superior colliculus
nTPM: 477.9
2668 Female, age 75, unknown 488.2
1796 Male, age 53, unknown 482.5
2261 Male, age 18, unknown 481.7
2587 Male, age 74, left hemisphere 481.7
1895 Male, age 76, right hemisphere 481.4
1913 Female, age 42, unknown 479.5
2087 Female, age 72, unknown 477.7
1995 Male, age 72, unknown 474.2
1839 Male, age 51, unknown 467.0
2664 Male, age 75, both hemispheres 465.1
Ventral tegmental area
nTPM: 484.2
1915 Female, age 42, unknown 498.6
2218 Male, age 76, both hemispheres 486.7
2223 Female, age 72, unknown 485.8
2410 Female, age 72, unknown 481.1
1942 Male, age 51, unknown 479.4
2021 Male, age 53, unknown 473.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 520.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 520.6
Samples: 139

Max nTPM: 962.6
Min nTPM: 332.2
Std nTPM: 120.6
Median nTPM: 490.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 962.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 929.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 847.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 840.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 835.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 824.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 797.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 785.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 766.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 757.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 745.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.2
FF:10158-103A5 76 years, female 123.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 334.5
Pig sample Sample description nTPM
Midbrain
nTPM: 330.1
Samples: 4

Max nTPM: 356.0
Min nTPM: 292.3
Sample A Female 356.0
Sample B Female 339.0
Sample C Male 332.9
Sample D Male 292.3
Periaqueductal gray
nTPM: 300.6
Samples: 3

Max nTPM: 365.5
Min nTPM: 260.3
Sample B Female 260.3
Sample C Male 365.5
Sample D Male 275.9
Substantia nigra
nTPM: 322.2
Samples: 4

Max nTPM: 434.6
Min nTPM: 225.4
Sample A Female 434.6
Sample B Female 267.8
Sample C Male 361.0
Sample D Male 225.4
Superior colliculi
nTPM: 334.5
Samples: 4

Max nTPM: 453.2
Min nTPM: 189.5
Sample A Female 453.2
Sample B Female 189.5
Sample C Male 389.5
Sample D Male 305.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.