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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:515.9 nTPM
HPA:515.9 nTPM
GTEx:473.8 nTPM
FANTOM5:108.2 Scaled Tags Per Million
Pig:319.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 515.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 495.7
1981 Female, age 72, midline 541.6
2048 Male, age 55, midline 488.4
2816 Male, age 47, midline 488.1
2565 Male, age 75, midline 484.4
2194 Female, age 79, both hemispheres 475.9
Cervical spinal cord, dorsal horn
nTPM: 515.9
2173 Female, age 72, unknown 551.5
2069 Male, age 47, both hemispheres 535.2
2296 Male, age 66, both hemispheres 532.9
1877 Male, age 55, unknown 508.0
2297 Male, age 75, both hemispheres 489.7
2721 Male, age 90, both hemispheres 478.4
Cervical spinal cord, ventral horn
nTPM: 498.9
2098 Female, age 72, unknown 557.5
2809 Male, age 90, both hemispheres 499.7
2480 Male, age 75, both hemispheres 496.4
2068 Male, age 55, unknown 494.9
2295 Male, age 66, both hemispheres 483.7
2820 Female, age 79, both hemispheres 461.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 473.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 473.8
Samples: 159

Max nTPM: 853.5
Min nTPM: 199.0
Std nTPM: 113.5
Median nTPM: 452.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 853.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 848.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 789.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 789.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 716.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 706.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 697.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 685.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 682.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 681.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 675.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 665.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 640.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 637.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 631.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 628.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 620.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 618.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 607.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 606.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 598.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 596.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 585.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 584.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 583.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 582.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 576.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 573.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 572.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 571.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 565.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 562.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 562.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 561.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 556.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 548.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 541.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 540.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 539.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 538.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 536.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 535.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 532.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 528.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 526.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 525.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 524.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 523.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 518.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 516.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 516.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 511.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 511.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 506.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 497.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 495.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 493.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 491.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 489.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 489.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 486.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 482.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 482.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 478.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 477.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 476.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 473.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 473.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 471.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 469.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 469.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 469.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 468.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 467.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 465.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 457.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 455.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 455.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 454.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 452.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 450.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 449.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 446.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 444.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 442.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 441.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 439.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 439.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 438.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 437.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 437.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 434.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 434.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 432.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 431.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 429.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 428.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 427.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 425.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 421.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 421.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 421.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 417.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 415.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 413.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 413.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 412.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 412.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 412.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 411.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 410.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 409.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 406.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 405.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 404.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 402.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 400.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 397.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 396.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 390.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 390.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 390.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 389.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 388.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 387.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 386.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 386.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 385.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 385.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 383.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 381.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 380.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 379.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 378.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 374.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 373.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 372.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 368.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 368.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 367.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 364.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 363.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 355.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 354.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 349.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 349.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 346.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 345.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 343.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 338.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 321.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 315.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 304.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 295.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 277.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 272.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 269.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 255.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 199.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 108.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 108.2
FF:10181-103D1 60 years, female 136.1
FF:10159-103A6 76 years, female 80.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 319.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 316.2
Samples: 4

Max nTPM: 351.3
Min nTPM: 296.4
Sample A Female 296.4
Sample B Female 313.3
Sample C Male 351.3
Sample D Male 303.6
Ventral spinal cord
nTPM: 319.6
Samples: 4

Max nTPM: 383.4
Min nTPM: 282.4
Sample A Female 319.4
Sample B Female 282.4
Sample C Male 383.4
Sample D Male 293.0

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