BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:80.3 nTPM
HPA:80.3 nTPM
GTEx:78.7 nTPM
FANTOM5:215.8 Scaled Tags Per Million
Pig:72.1 nTPM
Mouse:109.3 nTPM
Allen mouse:7.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036141
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 80.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 79.2
1857 Female, age 85, left hemisphere 88.5
1854 Male, age 80, left hemisphere 86.4
2290 Female, age 72, unknown 86.1
2846 Female, age 79, unknown 84.4
1781 Male, age 74, unknown 79.1
2481 Female, age 94, left hemisphere 72.1
2288 Male, age 75, left hemisphere 71.5
2289 Male, age 61, right hemisphere 65.3
Claustrum
nTPM: 70.6
2392 Female, age 94, both hemispheres 74.6
2198 Male, age 80, both hemispheres 73.8
2196 Female, age 79, unknown 73.6
2284 Female, age 91, both hemispheres 73.6
1956 Male, age 74, unknown 69.6
2568 Male, age 61, both hemispheres 69.6
2645 Female, age 72, unknown 69.3
2491 Male, age 75, both hemispheres 68.0
2292 Female, age 85, both hemispheres 63.4
Globus pallidus, externus
nTPM: 65.0
2646 Male, age 61, right hemisphere 75.5
2395 Male, age 75, both hemispheres 69.3
2772 Female, age 79, unknown 63.2
2567 Female, age 72, unknown 58.8
1996 Male, age 80, right hemisphere 58.1
Globus pallidus, internus
nTPM: 64.7
2483 Female, age 94, right hemisphere 82.1
2287 Male, age 75, right hemisphere 72.9
2778 Female, age 91, both hemispheres 69.1
1818 Male, age 74, unknown 60.0
2037 Male, age 80, right hemisphere 58.7
2566 Female, age 72, unknown 58.4
2111 Female, age 85, right hemisphere 51.5
Nucleus accumbens
nTPM: 80.3
1856 Female, age 91, right hemisphere 91.8
1783 Male, age 74, unknown 84.4
2824 Male, age 61, right hemisphere 84.4
2698 Female, age 72, unknown 83.0
1806 Female, age 85, left hemisphere 82.2
2391 Female, age 94, left hemisphere 79.7
2286 Male, age 75, left hemisphere 75.9
2732 Male, age 80, right hemisphere 61.3
Nucleus basalis of Meynert
nTPM: 76.1
2393 Male, age 80, right hemisphere 84.5
2569 Male, age 61, both hemispheres 77.3
2821 Male, age 75, both hemispheres 72.3
2484 Female, age 94, left hemisphere 70.3
Nucleus of the diagonal band
nTPM: 77.8
2775 Male, age 80, right hemisphere 85.9
2195 Female, age 85, both hemispheres 80.1
1812 Female, age 91, both hemispheres 80.0
1979 Male, age 74, unknown 73.1
2029 Male, age 61, right hemisphere 69.9
Olfactory tubercle
nTPM: 78.6
1846 Male, age 80, right hemisphere 85.1
1998 Female, age 91, both hemispheres 79.8
2856 Male, age 75, right hemisphere 77.8
2487 Female, age 94, left hemisphere 71.6
Putamen
nTPM: 79.1
1838 Male, age 80, right hemisphere 93.2
1937 Female, age 91, right hemisphere 89.0
2466 Female, age 79, unknown 79.1
1829 Male, age 74, unknown 76.1
2647 Male, age 75, left hemisphere 76.0
2482 Female, age 94, left hemisphere 74.5
2489 Female, age 72, unknown 65.8
Septal nuclei
nTPM: 74.6
2031 Female, age 72, unknown 87.7
1960 Male, age 74, unknown 84.4
2009 Female, age 91, both hemispheres 78.4
2629 Female, age 94, right hemisphere 73.1
2199 Male, age 80, right hemisphere 68.9
2059 Female, age 85, both hemispheres 67.3
2394 Male, age 61, left hemisphere 62.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.4
Samples: 246

Max nTPM: 127.0
Min nTPM: 42.9
Std nTPM: 14.6
Median nTPM: 68.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 127.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 123.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 110.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 106.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 105.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 105.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 104.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 104.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 100.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 99.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 98.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 78.7
Samples: 246

Max nTPM: 146.9
Min nTPM: 48.2
Std nTPM: 15.5
Median nTPM: 79.4
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 146.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 121.4
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 116.6
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 115.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 114.4
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 112.8
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 111.4
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 109.0
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 107.6
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 104.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 104.1
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Brain - Putamen (basal ganglia)
Average nTPM: 66.9
Samples: 205

Max nTPM: 139.9
Min nTPM: 38.9
Std nTPM: 15.2
Median nTPM: 64.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 139.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 108.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 106.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 104.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 102.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 101.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 100.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 100.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 98.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 96.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 94.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 215.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 201.4
FF:10164-103B2 76 years, female 201.4
Globus pallidus
Scaled Tags Per Million: 99.0
FF:10161-103A8 76 years, female 138.0
FF:10175-103C4 60 years, female 59.9
Nucleus accumbens
Scaled Tags Per Million: 152.6
FF:10037-101F1 23-56 years, mixed 152.6
Putamen
Scaled Tags Per Million: 215.8
FF:10176-103C5 60 years, female 215.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 72.1
Pig sample Sample description nTPM
Caudate
nTPM: 68.2
Samples: 4

Max nTPM: 72.8
Min nTPM: 63.8
Sample A Female 69.4
Sample B Female 63.8
Sample C Male 72.8
Sample D Male 66.9
Putamen
nTPM: 71.0
Samples: 4

Max nTPM: 92.2
Min nTPM: 61.5
Sample A Female 62.9
Sample B Female 61.5
Sample C Male 92.2
Sample D Male 67.5
Septum
nTPM: 72.1
Samples: 4

Max nTPM: 86.0
Min nTPM: 59.5
Sample A Female 75.9
Sample B Female 67.0
Sample C Male 86.0
Sample D Male 59.5
Ventral pallidum
nTPM: 69.1
Samples: 4

Max nTPM: 78.7
Min nTPM: 62.6
Sample A Female 78.7
Sample B Female 62.6
Sample C Male 67.8
Sample D Male 67.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 109.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 109.3
Samples: 4

Max nTPM: 114.4
Min nTPM: 104.2
Sample A Male 114.4
Sample B Male 109.2
Sample C Female 109.5
Sample D Female 104.2
Septum
nTPM: 76.5
Samples: 4

Max nTPM: 79.0
Min nTPM: 73.1
Sample A Male 78.5
Sample B Male 73.1
Sample C Female 75.3
Sample D Female 79.0
Ventral forebrain
nTPM: 89.0
Samples: 4

Max nTPM: 90.6
Min nTPM: 85.5
Sample A Male 90.6
Sample B Male 90.2
Sample C Female 85.5
Sample D Female 89.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.5
74821970 Antisense, RP_060321_02_F08, Mouse strain C57BL/6J (56 days, male) 7.5
Pallidum
Expression energy: 4.3
74821970 Antisense, RP_060321_02_F08, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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