We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CALM1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CALM1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:611.7 nTPM
FANTOM5:2360.1 Scaled Tags Per Million
Pig:970.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA044999Antibody CAB018558
Glial cells Not detectedMedium
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 611.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 611.7
Samples: 246

Max nTPM: 1602.2
Min nTPM: 291.3
Std nTPM: 217.9
Median nTPM: 570.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1602.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1300.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1194.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1168.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1137.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1136.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1072.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1059.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1052.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1048.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1034.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1009.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1008.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 999.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 997.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 987.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 981.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 981.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 980.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 972.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 964.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 952.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 952.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 936.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 915.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 901.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 891.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 886.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 882.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 880.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 878.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 873.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 868.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 867.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 861.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 858.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 852.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 842.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 840.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 829.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 825.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 821.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 817.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 815.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 812.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 797.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 796.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 795.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 790.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 781.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 779.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 775.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 770.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 769.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 765.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 765.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 765.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 760.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 751.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 749.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 746.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 746.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 742.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 742.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 737.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 736.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 722.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 718.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 718.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 715.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 714.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 707.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 706.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 705.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 705.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 704.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 702.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 689.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 685.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 681.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 675.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 671.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 670.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 669.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 669.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 668.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 666.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 662.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 661.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 660.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 656.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 653.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 653.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 653.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 651.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 650.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 648.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 648.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 645.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 642.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 633.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 626.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 621.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 618.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 615.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 611.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 607.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 602.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 601.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 600.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 599.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 597.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 596.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 591.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 589.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 585.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 585.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 584.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 581.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 581.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 579.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 577.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 572.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 567.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 559.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 556.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 551.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 549.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 548.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 546.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 543.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 543.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 542.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 541.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 535.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 535.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 534.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 533.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 532.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 532.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 529.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 528.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 526.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 525.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 523.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 523.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 521.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 520.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 518.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 518.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 517.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 516.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 508.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 502.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 502.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 501.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 498.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 498.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 495.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 490.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 487.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 487.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 485.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 483.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 481.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 480.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 480.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 479.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 479.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 479.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 474.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 468.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 468.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 464.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 462.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 461.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 456.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 454.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 451.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 450.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 445.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 438.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 438.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 436.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 436.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 433.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 433.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 432.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 430.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 428.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 426.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 425.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 421.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 420.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 419.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 418.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 417.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 416.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 414.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 411.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 410.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 409.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 404.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 404.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 398.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 398.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 394.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 394.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 392.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 391.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 385.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 381.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 379.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 377.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 376.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 376.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 374.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 371.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 371.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 371.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 370.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 364.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 363.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 360.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 360.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 358.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 355.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 354.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 345.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 344.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 343.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 341.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 340.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 337.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 330.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 330.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 330.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 330.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 326.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 324.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 323.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 317.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 315.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 311.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 308.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 291.3
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2360.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2360.1
FF:10164-103B2 76 years, female 2360.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 970.2
Pig sample Sample description nTPM
Caudate
nTPM: 970.2
Samples: 4

Max nTPM: 1125.8
Min nTPM: 902.5
Sample A Female 938.5
Sample B Female 914.0
Sample C Male 1125.8
Sample D Male 902.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.