MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20794.2 nTPM
HPA:20794.2 nTPM
GTEx:12085.2 nTPM
Pig:7124.6 nTPM
Mouse:4168.5 nTPM
Allen mouse:21.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20794.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16959.5
2219 Male, age 76, both hemispheres 22478.7
2586 Male, age 75, left hemisphere 21971.5
2666 Male, age 74, left hemisphere 19606.6
2828 Female, age 72, unknown 18303.5
1833 Male, age 53, unknown 16628.1
1870 Female, age 42, unknown 15972.8
1830 Male, age 51, unknown 15945.2
1827 Male, age 72, unknown 13984.1
2019 Male, age 18, unknown 13064.1
2411 Female, age 72, unknown 11640.7
Dorsal raphe nucleus
nTPM: 13024.6
1828 Male, age 53, unknown 15538.9
2047 Male, age 72, unknown 14032.4
2750 Male, age 76, both hemispheres 13581.4
2016 Female, age 72, unknown 12113.1
2298 Female, age 72, unknown 9856.9
Inferior colliculus
nTPM: 15473.7
2849 Male, age 72, unknown 21687.6
1890 Male, age 53, unknown 15390.7
1848 Female, age 42, unknown 14106.3
2097 Female, age 72, unknown 10710.4
Median raphe nucleus
nTPM: 20794.2
2220 Male, age 76, midline 20794.2
Pedunculopontine tegmental nucleus
nTPM: 15996.5
2334 Male, age 80, both hemispheres 18391.3
2338 Male, age 61, both hemispheres 17428.0
1921 Female, age 85, both hemispheres 12170.2
Periaquaductal grey, anterior
nTPM: 12988.9
2502 Female, age 75, unknown 14233.0
1795 Male, age 51, unknown 12495.2
1947 Male, age 18, unknown 12238.6
Periaquaductal grey, dorsal
nTPM: 15762.3
2850 Male, age 76, both hemispheres 21820.8
1831 Male, age 72, unknown 14728.3
2464 Female, age 72, unknown 13557.8
1840 Male, age 53, unknown 12942.3
Periaquaductal grey, lateral
nTPM: 12515.1
2140 Male, age 76, both hemispheres 14275.1
2053 Male, age 18, unknown 12706.7
2272 Male, age 74, both hemispheres 10563.6
Pretectal area
nTPM: 15233.5
1816 Male, age 51, unknown 18591.1
1944 Female, age 72, unknown 18489.5
2667 Female, age 75, unknown 17965.0
1817 Female, age 42, unknown 17876.3
1815 Male, age 53, unknown 17464.1
2825 Male, age 18, unknown 15509.2
2007 Male, age 72, unknown 15380.5
2407 Male, age 75, both hemispheres 13535.0
2224 Female, age 72, unknown 11532.9
2316 Male, age 76, right hemisphere 10957.8
2273 Male, age 74, both hemispheres 10267.0
Red nucleus
nTPM: 16071.3
2584 Male, age 75, left hemisphere 19308.9
2588 Male, age 74, left hemisphere 18144.4
2823 Male, age 76, right hemisphere 17532.8
2503 Female, age 72, unknown 17472.6
1954 Female, age 42, unknown 16813.6
1865 Male, age 51, unknown 16230.9
2785 Male, age 18, unknown 15877.9
2227 Male, age 72, unknown 15029.6
1904 Male, age 53, unknown 14802.9
2769 Male, age 72, unknown 14764.9
2725 Female, age 75, unknown 13719.1
1821 Female, age 72, unknown 13157.6
Substantia nigra
nTPM: 16634.5
2665 Male, age 74, both hemispheres 24554.3
2699 Male, age 18, unknown 23404.7
1916 Female, age 42, unknown 17770.5
1941 Male, age 53, unknown 16427.2
2583 Male, age 75, right hemisphere 15531.7
1889 Female, age 72, unknown 14979.6
2590 Female, age 75, unknown 13793.0
2241 Male, age 72, unknown 13548.7
1851 Male, age 51, unknown 13378.3
2409 Female, age 72, unknown 12957.2
Superior colliculus
nTPM: 14932.6
2664 Male, age 75, both hemispheres 20466.3
2087 Female, age 72, unknown 16370.6
2587 Male, age 74, left hemisphere 15367.2
1913 Female, age 42, unknown 14995.5
2668 Female, age 75, unknown 14424.7
1839 Male, age 51, unknown 14250.6
1895 Male, age 76, right hemisphere 13948.3
1995 Male, age 72, unknown 13665.4
2261 Male, age 18, unknown 12985.9
1796 Male, age 53, unknown 12851.2
Ventral tegmental area
nTPM: 14932.5
2218 Male, age 76, both hemispheres 19343.9
2223 Female, age 72, unknown 16057.3
1942 Male, age 51, unknown 14874.6
1915 Female, age 42, unknown 13790.9
2021 Male, age 53, unknown 12914.7
2410 Female, age 72, unknown 12613.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12085.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12085.2
Samples: 139

Max nTPM: 50136.9
Min nTPM: 1802.7
Std nTPM: 9039.6
Median nTPM: 9427.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 50136.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 41606.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 40908.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 39542.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 39370.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 32832.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 31236.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 29656.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 28264.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28039.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 26826.2
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MIDBRAIN - Pig RNA-seqi
Average nTPM 7124.6
Pig sample Sample description nTPM
Midbrain
nTPM: 7124.6
Samples: 4

Max nTPM: 9663.0
Min nTPM: 5048.3
Sample A Female 6186.4
Sample B Female 9663.0
Sample C Male 7600.6
Sample D Male 5048.3
Periaqueductal gray
nTPM: 5316.8
Samples: 3

Max nTPM: 6100.1
Min nTPM: 4482.5
Sample B Female 5367.9
Sample C Male 6100.1
Sample D Male 4482.5
Substantia nigra
nTPM: 6274.7
Samples: 4

Max nTPM: 7949.6
Min nTPM: 3898.4
Sample A Female 7949.6
Sample B Female 5487.0
Sample C Male 7763.7
Sample D Male 3898.4
Superior colliculi
nTPM: 5702.4
Samples: 4

Max nTPM: 7270.6
Min nTPM: 1780.5
Sample A Female 6829.6
Sample B Female 1780.5
Sample C Male 7270.6
Sample D Male 6928.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4168.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4168.5
Samples: 4

Max nTPM: 4303.2
Min nTPM: 3915.1
Sample A Male 4303.2
Sample B Male 4293.8
Sample C Female 4162.0
Sample D Female 3915.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.6
75080269 Antisense, RP_060412_06_H09, Mouse strain C57BL/6J (56 days, male) 22.5
73906215 Antisense, RP_051212_04_H07, Mouse strain C57BL/6J (56 days, male) 20.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.