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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:473.2 nTPM
HPA:473.2 nTPM
GTEx:276.7 nTPM
FANTOM5:514.1 Scaled Tags Per Million
Pig:101.8 nTPM
Mouse:273.9 nTPM
Allen mouse:3.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 473.2
Sample id Sample description nTPM
Amygdala
nTPM: 473.2
2695 Female, age 67, right hemisphere 496.4
2514 Male, age 75, right hemisphere 477.8
1987 Female, age 91, left hemisphere 467.5
2517 Female, age 94, left hemisphere 462.4
2814 Male, age 76, right hemisphere 461.9
Basal amygdala
nTPM: 458.4
2827 Female, age 67, right hemisphere 486.2
2609 Male, age 75, right hemisphere 472.6
2110 Male, age 80, left hemisphere 456.2
2685 Female, age 94, left hemisphere 450.0
2243 Female, age 91, right hemisphere 444.0
1955 Male, age 76, both hemispheres 441.6
Central amygdala
nTPM: 471.6
2826 Female, age 94, left hemisphere 509.1
2515 Male, age 75, right hemisphere 481.5
1905 Male, age 76, both hemispheres 464.9
2239 Male, age 80, left hemisphere 455.6
2701 Female, age 91, right hemisphere 446.8
Corticomedial amygdala
nTPM: 457.2
2428 Male, age 75, right hemisphere 481.1
2535 Female, age 67, right hemisphere 467.5
2242 Female, age 91, right hemisphere 458.8
2829 Male, age 80, left hemisphere 452.3
2429 Female, age 94, left hemisphere 442.3
2240 Male, age 76, both hemispheres 440.9
Lateral amygdala
nTPM: 470.3
2830 Female, age 67, right hemisphere 504.0
2516 Male, age 75, right hemisphere 479.0
2534 Female, age 94, left hemisphere 473.0
2256 Male, age 80, left hemisphere 464.2
2255 Female, age 91, right hemisphere 451.8
1883 Male, age 76, both hemispheres 449.6
Stria terminalis, bed nucleus
nTPM: 442.0
1974 Female, age 91, both hemispheres 450.6
2201 Male, age 74, unknown 442.3
2486 Female, age 94, both hemispheres 433.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 276.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 276.7
Samples: 152

Max nTPM: 500.5
Min nTPM: 142.6
Std nTPM: 67.6
Median nTPM: 257.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 500.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 496.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 455.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 429.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 413.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 407.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 406.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 405.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 403.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 399.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 392.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 386.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 378.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 376.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 376.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 371.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 370.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 366.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 365.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 364.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 362.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 359.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 356.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 356.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 354.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 353.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 347.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 347.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 345.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 344.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 341.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 335.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 333.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 329.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 323.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 323.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 320.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 317.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 312.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 312.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 307.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 307.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 303.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 303.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 300.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 300.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 299.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 294.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 292.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 292.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 292.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 288.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 287.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 287.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 286.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 285.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 285.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 283.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 281.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 280.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 278.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 276.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 275.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 275.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 274.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 273.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 272.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 272.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 272.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 272.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 269.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 266.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 263.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 261.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 261.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 259.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 255.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 254.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 254.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 253.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 253.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 252.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 251.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 250.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 250.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 250.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 249.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 249.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 249.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 248.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 248.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 248.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 247.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 243.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 243.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 241.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 240.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 240.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 240.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 239.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 239.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 239.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 238.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 238.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 237.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 237.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 236.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 234.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 232.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 232.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 230.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 230.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 229.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 228.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 227.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 227.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 226.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 225.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 224.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 223.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 222.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 221.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 221.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 218.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 217.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 217.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 217.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 216.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 213.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 213.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 211.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 211.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 208.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 208.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 207.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 204.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 202.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 201.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 199.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 199.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 199.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 197.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 195.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 190.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 190.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 188.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 186.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 185.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 178.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 174.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 168.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 142.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 514.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 514.1
FF:10151-102I7 76 years, female 514.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 101.8
Pig sample Sample description nTPM
Amygdala
nTPM: 101.8
Samples: 4

Max nTPM: 127.5
Min nTPM: 83.2
Sample A Female 127.5
Sample B Female 105.3
Sample C Male 91.0
Sample D Male 83.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 273.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 273.9
Samples: 4

Max nTPM: 290.1
Min nTPM: 258.7
Sample A Male 258.7
Sample B Male 276.8
Sample C Female 290.1
Sample D Female 270.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.5
71021172 Antisense, RP_050531_01_G07, Mouse strain C57BL/6J (56 days, male) 3.5

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