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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:788.2 nTPM
HPA:788.2 nTPM
GTEx:606.4 nTPM
FANTOM5:1347.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB004288
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 788.2
overview
Male, age 65
Small intestine sample 232
nTPM: 938.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 695.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 886.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 632.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 606.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 606.4
Samples: 187

Max nTPM: 1118.9
Min nTPM: 331.3
Std nTPM: 160.0
Median nTPM: 559.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1118.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1070.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1031.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1007.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1004.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 956.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 955.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 952.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 935.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 913.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 899.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 893.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 874.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 864.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 863.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 857.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 848.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 843.0
GTEX-1192X-2526-SM-59868 50-59 years, male 835.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 834.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 834.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 827.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 816.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 816.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 794.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 792.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 790.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 789.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 779.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 778.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 775.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 767.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 753.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 752.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 750.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 750.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 749.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 740.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 734.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 734.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 733.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 730.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 729.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 725.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 722.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 711.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 710.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 706.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 697.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 696.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 695.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 693.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 693.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 690.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 687.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 685.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 683.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 680.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 672.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 667.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 666.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 665.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 663.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 662.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 657.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 651.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 650.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 647.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 643.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 624.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 622.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 616.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 613.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 612.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 607.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 606.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 599.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 598.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 597.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 594.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 594.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 593.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 593.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 592.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 589.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 587.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 584.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 581.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 578.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 576.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 573.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 569.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 567.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 559.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 556.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 554.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 553.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 552.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 549.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 548.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 548.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 547.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 546.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 543.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 543.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 543.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 540.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 538.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 537.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 536.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 534.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 532.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 530.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 527.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 525.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 525.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 523.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 520.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 519.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 519.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 518.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 518.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 515.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 514.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 511.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 510.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 510.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 509.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 508.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 508.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 504.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 504.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 502.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 501.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 501.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 499.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 499.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 498.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 496.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 493.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 492.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 491.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 485.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 484.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 481.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 481.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 479.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 477.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 474.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 470.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 470.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 469.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 465.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 463.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 451.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 450.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 449.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 448.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 447.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 443.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 443.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 440.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 439.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 438.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 437.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 432.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 430.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 429.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 429.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 427.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 427.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 426.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 426.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 418.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 417.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 415.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 414.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 413.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 405.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 395.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 382.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 381.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 370.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 369.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 365.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 351.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 331.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1347.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1347.2
FF:10024-101D6 15,40,85 years, mixed 1347.2

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