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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:86389.3 nTPM
HPA:86389.3 nTPM
Pig:19948.4 nTPM
Mouse:13761.6 nTPM

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 86389.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 72532.4
2301 Female, age 85, both hemispheres 107509.1
2188 Female, age 91, both hemispheres 63813.5
1984 Male, age 76, both hemispheres 62068.7
2090 Male, age 80, both hemispheres 56738.3
Area postrema
nTPM: 74854.1
2306 Male, age 80, both hemispheres 90863.5
2799 Male, age 61, both hemispheres 75195.1
2054 Male, age 76, both hemispheres 58503.8
Cuneate nuclei
nTPM: 75797.7
2381 Male, age 80, both hemispheres 89451.3
2131 Male, age 76, both hemispheres 78013.6
2376 Male, age 61, both hemispheres 59928.2
Dorsal cochlear nucleus
nTPM: 69297.6
2378 Male, age 80, both hemispheres 78279.2
2802 Male, age 74, right hemisphere 72522.1
2058 Male, age 76, both hemispheres 66559.3
2187 Female, age 91, both hemispheres 65829.4
2370 Male, age 61, both hemispheres 63298.0
Dorsal medullary reticular nucleus
nTPM: 63121.6
2373 Male, age 61, both hemispheres 69099.0
2088 Male, age 76, both hemispheres 68294.0
2040 Female, age 85, both hemispheres 51971.9
Dorsal motor vagal complex
nTPM: 73233.0
2797 Male, age 61, both hemispheres 90468.6
2185 Male, age 76, both hemispheres 89132.8
2807 Female, age 85, both hemispheres 88538.5
2813 Female, age 72, unknown 71190.5
2643 Male, age 74, both hemispheres 66593.2
2844 Male, age 55, unknown 63513.9
2133 Female, age 91, both hemispheres 59923.0
2000 Male, age 74, unknown 56503.1
Dorsal tegmental nucleus
nTPM: 69292.4
2358 Male, age 61, both hemispheres 92100.5
2326 Male, age 74, both hemispheres 63927.6
2083 Male, age 80, both hemispheres 61107.8
1936 Male, age 76, left hemisphere 60033.6
Dorsolateral tegmental area
nTPM: 60029.3
2141 Male, age 76, both hemispheres 71948.4
2337 Male, age 61, both hemispheres 63233.1
2751 Female, age 85, both hemispheres 55512.2
2654 Male, age 80, both hemispheres 55502.0
2360 Male, age 74, both hemispheres 53950.8
Gigantocellular reticular nuclei, medullary
nTPM: 68204.7
2310 Male, age 80, both hemispheres 84158.9
2314 Male, age 61, both hemispheres 77664.9
2387 Female, age 91, both hemispheres 75667.3
2462 Male, age 74, both hemispheres 63973.9
2022 Male, age 76, right hemisphere 56506.7
1876 Female, age 85, both hemispheres 51256.4
Gigantocellular reticular nuclei, pars
nTPM: 77460.3
2330 Male, age 80, both hemispheres 110338.7
2706 Male, age 80, both hemispheres 77482.7
2336 Male, age 61, both hemispheres 68633.1
2168 Male, age 76, both hemispheres 68099.0
2084 Female, age 85, both hemispheres 62748.0
Inferior olive
nTPM: 67541.0
2628 Female, age 91, both hemispheres 81776.1
2379 Male, age 80, both hemispheres 76720.0
2085 Female, age 85, both hemispheres 63120.5
2178 Male, age 61, both hemispheres 61815.4
2563 Male, age 74, both hemispheres 54272.8
Kolliker-Fuse nucleus
nTPM: 67350.6
2793 Female, age 91, left hemisphere 83520.0
2163 Male, age 80, both hemispheres 66567.4
2315 Male, age 76, right hemisphere 51964.5
Lateral lemniscal nuclei
nTPM: 67917.3
2320 Female, age 91, left hemisphere 79041.4
2169 Male, age 76, both hemispheres 78543.4
2453 Male, age 74, right hemisphere 76029.7
2746 Female, age 85, left hemisphere 53019.2
2036 Male, age 80, both hemispheres 52952.7
Lateral medullary reticular nucleus
nTPM: 63680.4
2374 Male, age 61, both hemispheres 83018.5
2804 Female, age 91, both hemispheres 71791.4
2190 Female, age 85, both hemispheres 65846.4
2044 Male, age 76, both hemispheres 55961.7
2305 Male, age 74, both hemispheres 52777.1
2852 Male, age 80, both hemispheres 52687.4
Lateral parabrachial nucleus
nTPM: 57736.8
2792 Male, age 76, both hemispheres 63375.3
2790 Male, age 61, both hemispheres 60020.8
2139 Female, age 85, right hemisphere 55049.3
2013 Male, age 80, both hemispheres 52501.9
Lateral vestibular nucleus
nTPM: 80874.5
2184 Male, age 76, both hemispheres 82963.9
2311 Male, age 80, both hemispheres 78785.1
Locus coeruleus
nTPM: 63701.7
2720 Male, age 74, both hemispheres 75764.1
2162 Male, age 80, both hemispheres 71340.8
2788 Male, age 74, unknown 66956.5
2317 Female, age 72, unknown 61755.7
1980 Male, age 76, both hemispheres 59613.3
2014 Male, age 55, unknown 57408.7
2123 Female, age 91, both hemispheres 53072.6
Medial olivary nucleus
nTPM: 58246.5
2851 Male, age 80, both hemispheres 77184.6
2138 Female, age 91, both hemispheres 53853.4
1962 Male, age 76, both hemispheres 52645.7
1943 Male, age 61, both hemispheres 49302.5
Medial parabrachial nucleus
nTPM: 61584.8
2854 Male, age 80, both hemispheres 68721.7
2786 Male, age 76, both hemispheres 67507.4
2156 Male, age 61, both hemispheres 64106.3
2170 Female, age 91, both hemispheres 58960.7
2463 Female, age 85, right hemisphere 48627.8
Medial periolivary nuclei
nTPM: 65376.9
2458 Female, age 91, both hemispheres 89602.1
2171 Female, age 85, both hemispheres 71418.6
2063 Male, age 76, both hemispheres 57546.9
2081 Male, age 80, both hemispheres 55085.8
2791 Male, age 74, right hemisphere 53231.2
Medial vestibular nucleus
nTPM: 65207.1
2624 Male, age 61, both hemispheres 70176.1
2803 Female, age 91, both hemispheres 69692.0
2134 Male, age 76, both hemispheres 68681.6
2801 Male, age 74, both hemispheres 65098.4
2093 Male, age 80, both hemispheres 60940.5
2743 Female, age 85, both hemispheres 56654.0
Motor facial nucleus
nTPM: 76737.4
2327 Male, age 80, both hemispheres 103452.2
2795 Female, age 91, both hemispheres 95762.6
2697 Female, age 85, both hemispheres 85640.2
2365 Male, age 74, right hemisphere 62657.2
2062 Male, age 76, both hemispheres 58310.3
2126 Male, age 61, both hemispheres 54602.1
Motor hypoglossal nucleus
nTPM: 69949.4
2461 Male, age 61, both hemispheres 95219.8
2182 Male, age 80, both hemispheres 76062.9
2132 Female, age 85, both hemispheres 69386.2
2125 Female, age 91, both hemispheres 55911.4
2277 Male, age 76, both hemispheres 53166.9
Motor trigeminal nucleus
nTPM: 67595.5
2321 Female, age 91, both hemispheres 82380.6
2309 Male, age 76, both hemispheres 69978.4
2335 Male, age 61, both hemispheres 67914.4
2079 Male, age 80, both hemispheres 59681.3
2560 Male, age 74, both hemispheres 58022.5
Nuclei of the trapezoid body
nTPM: 64149.5
2368 Female, age 91, both hemispheres 81318.4
2166 Male, age 80, both hemispheres 66450.5
1983 Male, age 76, both hemispheres 58704.5
2735 Female, age 85, both hemispheres 57388.0
2159 Male, age 61, both hemispheres 56885.9
Nucleus ambiguus
nTPM: 50412.6
2071 Male, age 76, both hemispheres 50840.6
2096 Female, age 85, both hemispheres 49984.7
Nucleus cuneatus
nTPM: 77569.6
2805 Female, age 91, both hemispheres 105693.2
2808 Female, age 85, both hemispheres 85334.9
2100 Male, age 76, both hemispheres 75168.4
2380 Male, age 80, both hemispheres 74182.7
2562 Male, age 61, both hemispheres 64903.1
2564 Male, age 74, both hemispheres 60135.4
Nucleus gracilis
nTPM: 79031.5
2299 Female, age 85, both hemispheres 99961.0
2382 Male, age 80, both hemispheres 79561.0
2627 Male, age 74, both hemispheres 57572.6
Nucleus raphe magnus
nTPM: 71341.9
2328 Male, age 80, both hemispheres 84297.0
2459 Female, age 91, both hemispheres 81210.8
2172 Female, age 85, both hemispheres 79905.1
2455 Male, age 74, both hemispheres 68123.4
2051 Male, age 76, both hemispheres 57838.9
2160 Male, age 61, both hemispheres 56676.2
Nucleus raphe obscurus
nTPM: 55671.3
2845 Female, age 85, midline 59700.2
2800 Male, age 61, midline 56849.4
2142 Male, age 76, midline 50464.2
Nucleus raphe pallidus
nTPM: 54169.7
2183 Male, age 80, midline 62615.1
2145 Male, age 76, midline 51366.1
1924 Male, age 61, midline 48528.0
Nucleus tractus solitarii
nTPM: 66820.8
2307 Male, age 80, both hemispheres 79843.3
2191 Female, age 85, both hemispheres 76412.3
2656 Male, age 76, both hemispheres 59313.9
2144 Female, age 91, right hemisphere 51713.6
Paramedian reticular nucleus
nTPM: 57761.5
2313 Male, age 61, both hemispheres 64789.3
2050 Female, age 85, both hemispheres 57031.5
2052 Male, age 76, both hemispheres 55500.6
2057 Male, age 80, both hemispheres 53724.4
Parvicellular reticular nuclei
nTPM: 60493.0
2095 Male, age 76, both hemispheres 65017.3
2558 Male, age 74, both hemispheres 60482.0
2119 Male, age 80, both hemispheres 55979.7
Parvicellular reticular nuclei, medullary
nTPM: 66253.5
2181 Male, age 80, left hemisphere 75251.2
2189 Female, age 91, both hemispheres 63418.5
2091 Female, age 85, both hemispheres 60090.7
Peritrigeminal nucleus
nTPM: 56972.7
2136 Male, age 76, both hemispheres 62014.5
2179 Male, age 61, both hemispheres 56375.7
2067 Female, age 85, both hemispheres 52527.8
Pontine nuclei
nTPM: 56591.9
2319 Female, age 91, both hemispheres 69713.6
2454 Male, age 74, left hemisphere 61196.6
2115 Male, age 80, left hemisphere 56969.9
2787 Female, age 85, both hemispheres 56802.3
1968 Male, age 76, left hemisphere 54892.7
1863 Male, age 55, unknown 51699.4
2109 Female, age 72, unknown 51643.1
2727 Male, age 61, right hemisphere 49817.4
Pontine raphe nucleus
nTPM: 64629.6
2853 Male, age 76, midline 70171.4
2122 Female, age 85, midline 59087.7
Posteroventral cochlear nucleus
nTPM: 60861.9
2341 Male, age 80, both hemispheres 68881.3
2371 Male, age 61, both hemispheres 66648.5
2752 Female, age 85, both hemispheres 58631.7
2135 Female, age 91, both hemispheres 55469.5
2070 Male, age 76, both hemispheres 54678.6
Prepositus hypoglossal nucleus
nTPM: 61292.5
2855 Female, age 85, right hemisphere 62077.2
2086 Male, age 80, both hemispheres 60507.9
Principal sensory trigeminal nucleus
nTPM: 74556.7
2324 Male, age 76, both hemispheres 106773.6
2367 Female, age 91, left hemisphere 82882.0
2158 Male, age 61, both hemispheres 56304.4
2008 Male, age 80, left hemisphere 52266.7
Reticular pontine nucleus, caudal
nTPM: 77512.2
2457 Female, age 91, both hemispheres 100725.1
2332 Male, age 80, right hemisphere 96778.4
2092 Male, age 76, both hemispheres 57793.5
2559 Male, age 74, both hemispheres 54751.7
Reticular pontine nucleus, oral
nTPM: 66854.7
2366 Female, age 91, both hemispheres 93159.6
2167 Male, age 76, both hemispheres 72749.2
2361 Male, age 74, both hemispheres 59360.7
1939 Male, age 80, both hemispheres 56737.7
2012 Female, age 85, both hemispheres 52266.2
Reticulotegmental nucleus
nTPM: 86389.3
2322 Female, age 91, both hemispheres 96600.6
2325 Male, age 76, both hemispheres 87888.0
2333 Male, age 80, both hemispheres 85650.3
2452 Male, age 74, both hemispheres 75418.4
Spinal trigeminal nucleus, caudal
nTPM: 72324.6
2308 Male, age 80, both hemispheres 80198.4
2390 Female, age 91, both hemispheres 79861.5
2447 Male, age 76, both hemispheres 72809.5
2312 Male, age 61, both hemispheres 65240.3
2642 Male, age 74, both hemispheres 63513.2
Spinal trigeminal nucleus, interpolar
nTPM: 62221.9
2389 Female, age 91, both hemispheres 78009.8
2625 Male, age 61, both hemispheres 65690.3
2066 Male, age 76, right hemisphere 58893.8
2386 Female, age 85, both hemispheres 55675.4
2033 Male, age 80, both hemispheres 52840.3
Spinal trigeminal nucleus, oral
nTPM: 68757.5
2164 Male, age 80, both hemispheres 87449.3
1978 Male, age 76, both hemispheres 62615.9
2737 Female, age 85, both hemispheres 56207.4
Spinal vestibular nucleus
nTPM: 64447.2
2796 Male, age 61, both hemispheres 76388.5
2806 Female, age 85, both hemispheres 70582.7
2748 Male, age 76, both hemispheres 62530.5
2186 Female, age 91, both hemispheres 62093.2
2384 Male, age 74, both hemispheres 57827.2
2780 Male, age 80, both hemispheres 57261.1
Subcoeruleus area
nTPM: 62665.9
2323 Female, age 91, left hemisphere 70853.3
2451 Male, age 74, both hemispheres 67336.5
2089 Male, age 76, left hemisphere 61947.8
1958 Male, age 80, both hemispheres 59094.1
2369 Female, age 85, left hemisphere 54097.9
Superior olive
nTPM: 64168.9
2329 Male, age 80, right hemisphere 86498.1
2561 Female, age 91, both hemispheres 73764.2
2364 Male, age 74, right hemisphere 55473.1
2020 Male, age 76, both hemispheres 53319.5
1875 Female, age 85, both hemispheres 51789.5
Superior vestibular nucleus
nTPM: 56782.1
2061 Male, age 76, both hemispheres 59926.9
2383 Male, age 74, both hemispheres 55926.5
2015 Male, age 80, both hemispheres 54493.0
Ventral medullary reticular nucleus
nTPM: 65178.2
2372 Male, age 61, both hemispheres 68950.8
2060 Male, age 76, both hemispheres 61405.6
Ventral periolivary nuclei
nTPM: 66760.7
2794 Female, age 91, left hemisphere 75481.6
2165 Male, age 80, both hemispheres 72884.0
2130 Female, age 85, both hemispheres 68146.7
2023 Male, age 76, both hemispheres 50530.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 62409.1
2302 Female, age 91, both hemispheres 76499.0
2180 Male, age 61, both hemispheres 63152.3
2118 Male, age 80, both hemispheres 58472.2
1986 Male, age 76, both hemispheres 57233.2
2741 Female, age 85, both hemispheres 56688.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 72395.0
2840 Female, age 85, both hemispheres 82173.3
2456 Female, age 91, both hemispheres 79812.8
2359 Male, age 61, both hemispheres 76328.5
2161 Male, age 80, both hemispheres 69897.0
2449 Male, age 74, both hemispheres 66314.3
1959 Male, age 76, both hemispheres 59844.1

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19948.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 16763.3
Samples: 4

Max nTPM: 23523.2
Min nTPM: 13066.9
Sample A Female 23523.2
Sample B Female 15985.1
Sample C Male 14478.1
Sample D Male 13066.9
Pons
nTPM: 19948.4
Samples: 4

Max nTPM: 30625.6
Min nTPM: 11103.4
Sample A Female 30625.6
Sample B Female 11103.4
Sample C Male 18432.9
Sample D Male 19631.8

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13761.6
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 13761.6
Samples: 4

Max nTPM: 14396.3
Min nTPM: 12880.3
Sample A Male 14275.5
Sample B Male 13494.1
Sample C Female 14396.3
Sample D Female 12880.3

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