MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1840.1 nTPM
HPA:1840.1 nTPM
GTEx:1794.2 nTPM
FANTOM5:102.6 Scaled Tags Per Million
Pig:320.2 nTPM
Mouse:646.4 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1840.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1816.8
2666 Male, age 74, left hemisphere 1858.1
1870 Female, age 42, unknown 1843.1
2586 Male, age 75, left hemisphere 1842.1
2828 Female, age 72, unknown 1818.4
2411 Female, age 72, unknown 1816.6
1827 Male, age 72, unknown 1810.2
2019 Male, age 18, unknown 1803.9
1833 Male, age 53, unknown 1798.5
1830 Male, age 51, unknown 1796.9
2219 Male, age 76, both hemispheres 1779.6
Dorsal raphe nucleus
nTPM: 1814.1
2750 Male, age 76, both hemispheres 1833.8
2298 Female, age 72, unknown 1833.4
2016 Female, age 72, unknown 1823.1
1828 Male, age 53, unknown 1801.3
2047 Male, age 72, unknown 1778.7
Inferior colliculus
nTPM: 1804.8
1890 Male, age 53, unknown 1826.8
2097 Female, age 72, unknown 1811.5
2849 Male, age 72, unknown 1798.4
1848 Female, age 42, unknown 1782.3
Median raphe nucleus
nTPM: 1809.5
2220 Male, age 76, midline 1809.5
Pedunculopontine tegmental nucleus
nTPM: 1827.1
2338 Male, age 61, both hemispheres 1857.3
2334 Male, age 80, both hemispheres 1837.3
1921 Female, age 85, both hemispheres 1786.8
Periaquaductal grey, anterior
nTPM: 1819.9
2502 Female, age 75, unknown 1863.9
1795 Male, age 51, unknown 1802.5
1947 Male, age 18, unknown 1793.4
Periaquaductal grey, dorsal
nTPM: 1804.4
1840 Male, age 53, unknown 1833.7
2464 Female, age 72, unknown 1800.5
1831 Male, age 72, unknown 1799.5
2850 Male, age 76, both hemispheres 1784.1
Periaquaductal grey, lateral
nTPM: 1791.1
2053 Male, age 18, unknown 1814.8
2140 Male, age 76, both hemispheres 1796.3
2272 Male, age 74, both hemispheres 1762.1
Pretectal area
nTPM: 1801.8
2316 Male, age 76, right hemisphere 1835.4
2224 Female, age 72, unknown 1815.4
1817 Female, age 42, unknown 1814.8
2825 Male, age 18, unknown 1811.2
2007 Male, age 72, unknown 1810.4
1815 Male, age 53, unknown 1808.8
1816 Male, age 51, unknown 1793.5
1944 Female, age 72, unknown 1789.7
2667 Female, age 75, unknown 1789.0
2407 Male, age 75, both hemispheres 1788.1
2273 Male, age 74, both hemispheres 1763.4
Red nucleus
nTPM: 1839.5
2503 Female, age 72, unknown 1888.5
1865 Male, age 51, unknown 1867.2
1904 Male, age 53, unknown 1867.2
2227 Male, age 72, unknown 1848.9
1821 Female, age 72, unknown 1847.0
2584 Male, age 75, left hemisphere 1841.8
2769 Male, age 72, unknown 1832.2
2588 Male, age 74, left hemisphere 1828.0
2785 Male, age 18, unknown 1825.2
2725 Female, age 75, unknown 1824.6
1954 Female, age 42, unknown 1810.2
2823 Male, age 76, right hemisphere 1792.8
Substantia nigra
nTPM: 1840.1
1851 Male, age 51, unknown 1896.7
2665 Male, age 74, both hemispheres 1881.6
2699 Male, age 18, unknown 1880.2
2241 Male, age 72, unknown 1865.1
2409 Female, age 72, unknown 1847.2
1916 Female, age 42, unknown 1828.4
1889 Female, age 72, unknown 1815.3
2590 Female, age 75, unknown 1809.9
2583 Male, age 75, right hemisphere 1795.5
1941 Male, age 53, unknown 1781.2
Superior colliculus
nTPM: 1825.0
1913 Female, age 42, unknown 1870.2
2587 Male, age 74, left hemisphere 1864.5
1995 Male, age 72, unknown 1840.2
2668 Female, age 75, unknown 1834.6
1796 Male, age 53, unknown 1817.2
2664 Male, age 75, both hemispheres 1813.1
2087 Female, age 72, unknown 1807.4
1895 Male, age 76, right hemisphere 1802.7
1839 Male, age 51, unknown 1800.3
2261 Male, age 18, unknown 1799.6
Ventral tegmental area
nTPM: 1835.1
1915 Female, age 42, unknown 1870.5
2223 Female, age 72, unknown 1863.2
2021 Male, age 53, unknown 1842.6
1942 Male, age 51, unknown 1827.6
2410 Female, age 72, unknown 1814.5
2218 Male, age 76, both hemispheres 1792.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1794.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1794.2
Samples: 139

Max nTPM: 4615.7
Min nTPM: 614.0
Std nTPM: 738.5
Median nTPM: 1640.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4615.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4428.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4362.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4109.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4011.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3657.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3264.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 3185.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2895.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2889.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 2838.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.6
FF:10158-103A5 76 years, female 102.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 320.2
Pig sample Sample description nTPM
Midbrain
nTPM: 302.4
Samples: 4

Max nTPM: 445.1
Min nTPM: 185.9
Sample A Female 445.1
Sample B Female 321.1
Sample C Male 257.4
Sample D Male 185.9
Periaqueductal gray
nTPM: 233.2
Samples: 3

Max nTPM: 256.7
Min nTPM: 203.0
Sample B Female 256.7
Sample C Male 239.9
Sample D Male 203.0
Substantia nigra
nTPM: 308.9
Samples: 4

Max nTPM: 419.4
Min nTPM: 236.8
Sample A Female 419.4
Sample B Female 333.6
Sample C Male 236.8
Sample D Male 245.8
Superior colliculi
nTPM: 320.2
Samples: 4

Max nTPM: 389.9
Min nTPM: 260.5
Sample A Female 389.9
Sample B Female 345.2
Sample C Male 285.1
Sample D Male 260.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 646.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 646.4
Samples: 4

Max nTPM: 699.7
Min nTPM: 584.2
Sample A Male 699.7
Sample B Male 610.0
Sample C Female 584.2
Sample D Female 691.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
69873283 Antisense, RP_050510_04_H10, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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