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RPS28
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:197.1 nTPM
HPA:116.7 nTPM
GTEx:197.1 nTPM
FANTOM5:5.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA047132
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 116.7
overview
Male, age 65
Small intestine sample 232
nTPM: 158.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 109
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 101.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 98.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 197.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 197.1
Samples: 187

Max nTPM: 362.7
Min nTPM: 101.2
Std nTPM: 57.5
Median nTPM: 189.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 362.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 360.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 358.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 353.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 339.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 332.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 321.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 317.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 306.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 300.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 299.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 298.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 298.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 294.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 290.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 286.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 281.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 277.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 275.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 272.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 271.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 269.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 269.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 265.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 264.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 263.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 256.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 256.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 253.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 253.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 252.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 251.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 250.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 250.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 247.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 246.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 245.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 243.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 243.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 242.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 240.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 240.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 240.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 238.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 237.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 236.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 233.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 231.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 230.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 229.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 228.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 228.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 227.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 225.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 224.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 224.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 223.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 220.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 219.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 219.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 219.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 217.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 217.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 216.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 215.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 213.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 212.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 211.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 211.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 210.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 210.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 210.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 209.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 208.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 207.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 207.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 205.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 205.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 203.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 201.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 201.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 200.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 198.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 198.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 197.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 195.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 195.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 194.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 193.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 192.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 192.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 191.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 191.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 189.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 189.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 188.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 187.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 186.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 186.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 186.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 185.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 183.3
GTEX-1192X-2526-SM-59868 50-59 years, male 178.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 178.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 178.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 177.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 177.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 177.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 176.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 176.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 174.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 172.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 170.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 169.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 166.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 166.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 164.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 164.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 164.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 163.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 163.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 162.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 161.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 160.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 159.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 159.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 158.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 158.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 158.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 157.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 156.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 156.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 155.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 155.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 154.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 153.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 151.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 151.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 151.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 151.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 150.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 150.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 149.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 149.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 149.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 148.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 148.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 148.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 147.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 146.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 146.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 144.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 143.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 143.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 142.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 141.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 140.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 139.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 138.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 137.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 137.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 137.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 137.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 136.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 136.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 136.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 135.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 133.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 132.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 131.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 130.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 129.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 128.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 128.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 127.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 125.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 122.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 120.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 120.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 118.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 111.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 110.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 108.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 107.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 105.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 104.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 101.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 5.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 5.7
FF:10024-101D6 15,40,85 years, mixed 5.7

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