MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:290.8 nTPM
HPA:290.8 nTPM
GTEx:261.5 nTPM
FANTOM5:110.7 Scaled Tags Per Million
Mouse:540.8 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 290.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 275.9
2019 Male, age 18, unknown 289.8
2411 Female, age 72, unknown 287.6
1827 Male, age 72, unknown 282.2
1870 Female, age 42, unknown 276.1
1833 Male, age 53, unknown 274.7
2219 Male, age 76, both hemispheres 274.6
1830 Male, age 51, unknown 272.0
2666 Male, age 74, left hemisphere 269.5
2828 Female, age 72, unknown 269.3
2586 Male, age 75, left hemisphere 263.7
Dorsal raphe nucleus
nTPM: 283.2
2298 Female, age 72, unknown 295.6
1828 Male, age 53, unknown 290.4
2047 Male, age 72, unknown 285.0
2750 Male, age 76, both hemispheres 272.8
2016 Female, age 72, unknown 272.3
Inferior colliculus
nTPM: 280.9
2097 Female, age 72, unknown 289.5
1890 Male, age 53, unknown 284.0
1848 Female, age 42, unknown 279.7
2849 Male, age 72, unknown 270.4
Median raphe nucleus
nTPM: 269.1
2220 Male, age 76, midline 269.1
Pedunculopontine tegmental nucleus
nTPM: 281.5
1921 Female, age 85, both hemispheres 287.3
2334 Male, age 80, both hemispheres 282.9
2338 Male, age 61, both hemispheres 274.3
Periaquaductal grey, anterior
nTPM: 276.2
1947 Male, age 18, unknown 279.7
2502 Female, age 75, unknown 276.1
1795 Male, age 51, unknown 272.7
Periaquaductal grey, dorsal
nTPM: 269.1
1840 Male, age 53, unknown 271.0
2464 Female, age 72, unknown 270.2
1831 Male, age 72, unknown 268.4
2850 Male, age 76, both hemispheres 266.7
Periaquaductal grey, lateral
nTPM: 269.2
2272 Male, age 74, both hemispheres 275.9
2053 Male, age 18, unknown 270.1
2140 Male, age 76, both hemispheres 261.6
Pretectal area
nTPM: 281.5
1817 Female, age 42, unknown 296.0
2007 Male, age 72, unknown 292.9
1816 Male, age 51, unknown 291.4
1944 Female, age 72, unknown 290.4
1815 Male, age 53, unknown 282.7
2667 Female, age 75, unknown 281.4
2273 Male, age 74, both hemispheres 279.7
2224 Female, age 72, unknown 275.1
2825 Male, age 18, unknown 270.4
2316 Male, age 76, right hemisphere 270.3
2407 Male, age 75, both hemispheres 266.0
Red nucleus
nTPM: 279.9
1821 Female, age 72, unknown 308.6
2503 Female, age 72, unknown 284.2
2823 Male, age 76, right hemisphere 280.9
2725 Female, age 75, unknown 280.6
2785 Male, age 18, unknown 279.5
1865 Male, age 51, unknown 279.0
1954 Female, age 42, unknown 276.6
2769 Male, age 72, unknown 275.9
2227 Male, age 72, unknown 275.7
2588 Male, age 74, left hemisphere 275.6
1904 Male, age 53, unknown 273.2
2584 Male, age 75, left hemisphere 268.8
Substantia nigra
nTPM: 290.8
1916 Female, age 42, unknown 306.8
2241 Male, age 72, unknown 303.3
1851 Male, age 51, unknown 298.3
1889 Female, age 72, unknown 296.0
1941 Male, age 53, unknown 295.1
2409 Female, age 72, unknown 294.2
2665 Male, age 74, both hemispheres 287.1
2590 Female, age 75, unknown 281.3
2699 Male, age 18, unknown 279.3
2583 Male, age 75, right hemisphere 267.0
Superior colliculus
nTPM: 276.0
1895 Male, age 76, right hemisphere 289.3
2587 Male, age 74, left hemisphere 286.3
2087 Female, age 72, unknown 281.2
2668 Female, age 75, unknown 280.7
2261 Male, age 18, unknown 276.6
1796 Male, age 53, unknown 276.2
1839 Male, age 51, unknown 273.5
1913 Female, age 42, unknown 268.0
1995 Male, age 72, unknown 265.4
2664 Male, age 75, both hemispheres 262.7
Ventral tegmental area
nTPM: 280.4
2410 Female, age 72, unknown 294.1
1915 Female, age 42, unknown 291.3
2218 Male, age 76, both hemispheres 280.8
2223 Female, age 72, unknown 274.8
1942 Male, age 51, unknown 273.1
2021 Male, age 53, unknown 268.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 261.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 261.5
Samples: 139

Max nTPM: 532.9
Min nTPM: 109.9
Std nTPM: 69.1
Median nTPM: 252.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 532.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 478.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 453.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 434.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 408.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 401.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 398.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 394.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 389.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 386.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 385.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.7
FF:10158-103A5 76 years, female 110.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 540.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 540.8
Samples: 4

Max nTPM: 572.9
Min nTPM: 523.6
Sample A Male 572.9
Sample B Male 527.8
Sample C Female 523.6
Sample D Female 539.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
576416 Antisense, RP_040826_01_G02, Mouse strain C57BL/6J (56 days, male) 16.5
1159 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 13.3
1158 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.