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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:296.5 nTPM
HPA:296.5 nTPM
FANTOM5:223.3 Scaled Tags Per Million
Allen mouse:11.9 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 296.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 275.4
2188 Female, age 91, both hemispheres 279.4
1984 Male, age 76, both hemispheres 277.5
2301 Female, age 85, both hemispheres 272.4
2090 Male, age 80, both hemispheres 272.3
Dorsal cochlear nucleus
nTPM: 279.0
2187 Female, age 91, both hemispheres 286.3
2802 Male, age 74, right hemisphere 285.3
2370 Male, age 61, both hemispheres 277.8
2058 Male, age 76, both hemispheres 272.8
2378 Male, age 80, both hemispheres 272.8
Dorsal tegmental nucleus
nTPM: 279.4
2326 Male, age 74, both hemispheres 289.8
2083 Male, age 80, both hemispheres 287.1
1936 Male, age 76, left hemisphere 273.3
2358 Male, age 61, both hemispheres 267.4
Dorsolateral tegmental area
nTPM: 284.7
2654 Male, age 80, both hemispheres 293.7
2751 Female, age 85, both hemispheres 292.6
2360 Male, age 74, both hemispheres 291.1
2141 Male, age 76, both hemispheres 276.5
2337 Male, age 61, both hemispheres 269.4
Kolliker-Fuse nucleus
nTPM: 283.8
2163 Male, age 80, both hemispheres 294.9
2793 Female, age 91, left hemisphere 278.7
2315 Male, age 76, right hemisphere 277.8
Lateral lemniscal nuclei
nTPM: 286.6
2169 Male, age 76, both hemispheres 304.3
2036 Male, age 80, both hemispheres 299.9
2746 Female, age 85, left hemisphere 284.0
2453 Male, age 74, right hemisphere 274.6
2320 Female, age 91, left hemisphere 270.0
Lateral parabrachial nucleus
nTPM: 281.5
2139 Female, age 85, right hemisphere 294.4
2013 Male, age 80, both hemispheres 283.9
2790 Male, age 61, both hemispheres 274.6
2792 Male, age 76, both hemispheres 273.0
Lateral vestibular nucleus
nTPM: 282.0
2184 Male, age 76, both hemispheres 287.0
2311 Male, age 80, both hemispheres 277.0
Locus coeruleus
nTPM: 283.2
2123 Female, age 91, both hemispheres 298.3
2014 Male, age 55, unknown 288.6
2788 Male, age 74, unknown 283.8
2720 Male, age 74, both hemispheres 283.0
2317 Female, age 72, unknown 281.1
2162 Male, age 80, both hemispheres 275.6
1980 Male, age 76, both hemispheres 271.9
Medial olivary nucleus
nTPM: 277.1
1943 Male, age 61, both hemispheres 282.8
2138 Female, age 91, both hemispheres 282.1
1962 Male, age 76, both hemispheres 274.2
2851 Male, age 80, both hemispheres 269.2
Medial parabrachial nucleus
nTPM: 283.9
2170 Female, age 91, both hemispheres 301.9
2854 Male, age 80, both hemispheres 284.1
2463 Female, age 85, right hemisphere 278.4
2156 Male, age 61, both hemispheres 277.9
2786 Male, age 76, both hemispheres 277.2
Medial periolivary nuclei
nTPM: 286.3
2171 Female, age 85, both hemispheres 304.6
2063 Male, age 76, both hemispheres 303.5
2791 Male, age 74, right hemisphere 285.7
2081 Male, age 80, both hemispheres 269.2
2458 Female, age 91, both hemispheres 268.5
Motor facial nucleus
nTPM: 282.6
2062 Male, age 76, both hemispheres 307.8
2365 Male, age 74, right hemisphere 287.1
2697 Female, age 85, both hemispheres 280.0
2126 Male, age 61, both hemispheres 277.9
2795 Female, age 91, both hemispheres 276.2
2327 Male, age 80, both hemispheres 266.8
Motor trigeminal nucleus
nTPM: 275.0
2309 Male, age 76, both hemispheres 280.6
2079 Male, age 80, both hemispheres 277.3
2560 Male, age 74, both hemispheres 275.9
2335 Male, age 61, both hemispheres 275.8
2321 Female, age 91, both hemispheres 265.3
Nuclei of the trapezoid body
nTPM: 295.2
1983 Male, age 76, both hemispheres 310.1
2159 Male, age 61, both hemispheres 309.8
2735 Female, age 85, both hemispheres 304.5
2166 Male, age 80, both hemispheres 283.1
2368 Female, age 91, both hemispheres 268.5
Paramedian reticular nucleus
nTPM: 295.8
2050 Female, age 85, both hemispheres 306.1
2052 Male, age 76, both hemispheres 293.1
2057 Male, age 80, both hemispheres 293.1
2313 Male, age 61, both hemispheres 290.8
Pontine nuclei
nTPM: 296.5
1863 Male, age 55, unknown 321.0
2727 Male, age 61, right hemisphere 317.5
2787 Female, age 85, both hemispheres 303.0
2109 Female, age 72, unknown 301.6
1968 Male, age 76, left hemisphere 296.7
2454 Male, age 74, left hemisphere 284.0
2319 Female, age 91, both hemispheres 277.1
2115 Male, age 80, left hemisphere 270.9
Pontine raphe nucleus
nTPM: 290.8
2122 Female, age 85, midline 298.5
2853 Male, age 76, midline 283.1
Posteroventral cochlear nucleus
nTPM: 285.0
2752 Female, age 85, both hemispheres 298.1
2341 Male, age 80, both hemispheres 285.0
2371 Male, age 61, both hemispheres 282.1
2070 Male, age 76, both hemispheres 281.0
2135 Female, age 91, both hemispheres 278.7
Principal sensory trigeminal nucleus
nTPM: 287.7
2158 Male, age 61, both hemispheres 305.5
2008 Male, age 80, left hemisphere 291.5
2324 Male, age 76, both hemispheres 283.2
2367 Female, age 91, left hemisphere 270.6
Reticular pontine nucleus, caudal
nTPM: 277.9
2092 Male, age 76, both hemispheres 294.3
2559 Male, age 74, both hemispheres 280.9
2332 Male, age 80, right hemisphere 269.0
2457 Female, age 91, both hemispheres 267.4
Reticular pontine nucleus, oral
nTPM: 290.7
2361 Male, age 74, both hemispheres 297.9
2012 Female, age 85, both hemispheres 297.8
1939 Male, age 80, both hemispheres 296.2
2167 Male, age 76, both hemispheres 285.5
2366 Female, age 91, both hemispheres 276.0
Reticulotegmental nucleus
nTPM: 278.5
2325 Male, age 76, both hemispheres 288.6
2322 Female, age 91, both hemispheres 275.7
2452 Male, age 74, both hemispheres 275.6
2333 Male, age 80, both hemispheres 274.2
Spinal trigeminal nucleus, oral
nTPM: 283.1
2737 Female, age 85, both hemispheres 290.6
2164 Male, age 80, both hemispheres 281.9
1978 Male, age 76, both hemispheres 277.0
Subcoeruleus area
nTPM: 286.0
1958 Male, age 80, both hemispheres 293.1
2369 Female, age 85, left hemisphere 287.0
2451 Male, age 74, both hemispheres 286.1
2323 Female, age 91, left hemisphere 285.7
2089 Male, age 76, left hemisphere 278.1
Superior olive
nTPM: 287.4
1875 Female, age 85, both hemispheres 304.4
2020 Male, age 76, both hemispheres 297.8
2364 Male, age 74, right hemisphere 292.9
2561 Female, age 91, both hemispheres 271.1
2329 Male, age 80, right hemisphere 270.9
Superior vestibular nucleus
nTPM: 290.0
2383 Male, age 74, both hemispheres 300.8
2015 Male, age 80, both hemispheres 291.0
2061 Male, age 76, both hemispheres 278.2
Ventral periolivary nuclei
nTPM: 286.8
2023 Male, age 76, both hemispheres 293.0
2165 Male, age 80, both hemispheres 291.5
2130 Female, age 85, both hemispheres 291.3
2794 Female, age 91, left hemisphere 271.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 279.1
2840 Female, age 85, both hemispheres 292.4
1959 Male, age 76, both hemispheres 288.4
2449 Male, age 74, both hemispheres 277.3
2161 Male, age 80, both hemispheres 276.7
2359 Male, age 61, both hemispheres 272.9
2456 Female, age 91, both hemispheres 267.0

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 223.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 137.6
FF:10182-103D2 60 years, female 154.5
FF:10165-103B3 76 years, female 120.7
Pons
Scaled Tags Per Million: 223.3
FF:10033-101E6 18-54 years, mixed 223.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 11.9
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 11.9
576416 Antisense, RP_040826_01_G02, Mouse strain C57BL/6J (56 days, male) 12.7
1159 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 11.1
1158 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 10.9

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