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ATP1A2
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  • ATP1A2
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:337.4 nTPM
HPA:337.4 nTPM
GTEx:267.9 nTPM
FANTOM5:935.5 Scaled Tags Per Million
Mouse:477.6 nTPM
Allen mouse:9.3 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB022230
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 337.4
Sample id Sample description nTPM
Hippocampus
nTPM: 337.4
2148 Female, age 91, left hemisphere 362.9
2529 Female, age 94, left hemisphere 355.7
1911 Female, age 85, right hemisphere 335.0
1898 Male, age 80, left hemisphere 331.1
1855 Male, age 76, left hemisphere 329.4
2621 Female, age 67, right hemisphere 310.3
Dentate gyrus
nTPM: 295.5
2246 Female, age 85, both hemispheres 350.2
2528 Male, age 74, both hemispheres 344.1
2530 Female, age 94, left hemisphere 286.4
1927 Female, age 91, both hemispheres 284.8
2010 Male, age 76, both hemispheres 261.9
2531 Female, age 67, both hemispheres 245.5
Entorhinal gyrus
nTPM: 326.0
2117 Female, age 91, right hemisphere 398.4
1938 Female, age 85, left hemisphere 367.9
2686 Male, age 75, right hemisphere 348.6
1787 Male, age 76, left hemisphere 291.9
2764 Male, age 80, right hemisphere 280.5
2613 Female, age 94, left hemisphere 268.6
Hippocampus, CA1
nTPM: 309.6
2527 Male, age 74, both hemispheres 380.9
1873 Female, age 85, both hemispheres 305.1
2082 Female, age 91, right hemisphere 303.3
2749 Male, age 80, left hemisphere 284.0
2045 Male, age 76, both hemispheres 274.8
Hippocampus, CA2
nTPM: 305.3
1940 Female, age 85, left hemisphere 344.3
2113 Female, age 91, right hemisphere 331.0
2249 Male, age 74, both hemispheres 321.1
1963 Male, age 80, left hemisphere 300.5
2437 Female, age 94, left hemisphere 286.4
1892 Male, age 76, both hemispheres 248.3
Hippocampus, CA3
nTPM: 302.9
2861 Female, age 67, both hemispheres 333.2
1891 Female, age 85, both hemispheres 329.1
2620 Female, age 94, left hemisphere 300.7
2436 Male, age 74, both hemispheres 296.9
2137 Male, age 80, left hemisphere 280.6
1867 Male, age 76, both hemispheres 277.0
Parahippocampal cortex
nTPM: 331.7
2692 Male, age 74, both hemispheres 422.7
2622 Female, age 67, right hemisphere 400.3
1933 Female, age 85, both hemispheres 365.8
2250 Female, age 67, right hemisphere 350.2
2245 Female, age 91, both hemispheres 309.9
1850 Male, age 80, both hemispheres 309.2
2693 Female, age 94, both hemispheres 304.4
1990 Female, age 91, right hemisphere 296.1
2018 Male, age 76, both hemispheres 286.3
2532 Female, age 72, left hemisphere 272.3
Perirhinal gyrus
nTPM: 297.6
1794 Male, age 80, right hemisphere 330.1
1841 Female, age 85, right hemisphere 318.0
2521 Female, age 94, right hemisphere 297.7
1847 Female, age 91, left hemisphere 289.7
2848 Male, age 76, right hemisphere 252.6
Subiculum
nTPM: 321.8
2619 Male, age 74, both hemispheres 391.3
2729 Female, age 91, right hemisphere 387.9
2438 Female, age 94, left hemisphere 299.9
1977 Female, age 85, both hemispheres 297.4
1901 Male, age 80, both hemispheres 281.0
2042 Male, age 76, both hemispheres 273.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 267.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 267.9
Samples: 197

Max nTPM: 786.0
Min nTPM: 62.3
Std nTPM: 130.0
Median nTPM: 236.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 786.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 721.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 707.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 607.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 601.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 556.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 544.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 521.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 510.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 488.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 483.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 483.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 475.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 474.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 469.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 466.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 461.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 451.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 447.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 445.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 441.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 433.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 430.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 422.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 417.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 406.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 403.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 402.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 400.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 398.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 397.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 391.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 382.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 380.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 380.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 378.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 374.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 373.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 372.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 371.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 369.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 368.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 368.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 361.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 361.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 360.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 358.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 357.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 357.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 342.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 337.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 335.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 333.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 327.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 325.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 322.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 321.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 320.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 317.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 316.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 316.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 312.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 309.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 305.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 304.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 303.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 301.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 301.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 301.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 300.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 299.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 298.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 298.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 296.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 292.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 284.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 283.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 280.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 279.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 278.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 277.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 275.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 272.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 269.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 269.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 265.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 261.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 260.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 259.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 259.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 252.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 249.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 247.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 246.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 245.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 242.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 239.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 237.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 236.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 235.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 235.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 235.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 233.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 233.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 232.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 232.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 232.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 232.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 231.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 230.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 228.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 227.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 224.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 223.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 222.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 221.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 220.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 220.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 220.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 216.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 215.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 214.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 211.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 209.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 209.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 209.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 208.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 207.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 201.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 200.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 199.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 199.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 199.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 198.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 198.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 197.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 196.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 191.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 187.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 186.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 185.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 182.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 179.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 176.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 175.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 175.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 173.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 169.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 168.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 167.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 166.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 166.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 163.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 161.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 161.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 156.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 156.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 155.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 155.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 154.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 152.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 152.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 152.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 149.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 148.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 148.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 146.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 145.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 144.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 143.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 140.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 137.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 137.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 132.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 131.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 130.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 126.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 115.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 114.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 114.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 111.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 108.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 104.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 101.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 97.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 95.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 94.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 93.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 91.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 88.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 86.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 76.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 75.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 71.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 67.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 62.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 62.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 935.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 935.5
FF:10153-102I9 76 years, female 1015.0
FF:10169-103B7 60 years, female 855.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 477.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 477.7
Samples: 4

Max nTPM: 532.9
Min nTPM: 411.1
Sample A Male 497.6
Sample B Male 411.1
Sample C Female 469.0
Sample D Female 532.9
Hippocampal formation
nTPM: 354.0
Samples: 4

Max nTPM: 402.9
Min nTPM: 325.0
Sample A Male 345.3
Sample B Male 325.0
Sample C Female 342.6
Sample D Female 402.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.3
69173256 Antisense, RP_050329_01_C04, Mouse strain C57BL/6J (56 days, male) 9.3

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